Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq23339 129 1e-24 seq15285 107 4e-18 seq10215 104 5e-17 seq9986 95.1 3e-14 seq668 87.8 4e-12 >seq23339 Length=10106 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | || || || || || || || ||||||||||| || ||||| || Sbjct 3424 CCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 3365 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | || ||||| || ||||| |||||||| || | |||||| || ||||| || Sbjct 3364 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 3305 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||| ||||| |||||||| || ||||| || | ||| ||||| || || Sbjct 3304 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTTGGCTC 3249 >seq15285 Length=16418 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546 ||| || |||||||| | | | || ||||| | || ||||| || ||| | || ||||| Sbjct 5255 AGCCTTGTGGTGGTACTTTGTTTCCAAAGGTGTGGAGTACCTCGACACTGTGTTTTTCAT 5314 Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606 | |||| ||||| || || ||||| || || | ||||||||||| || | || ||||| Sbjct 5315 CTTACGGAAGAAGTTCAACCAAATCAGCTTCTTGCATGTATATCACCACTGCACCATGTT 5374 Query 78607 TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 ||| || | ||||| || || |||||| |||| || ||||| Sbjct 5375 CACTCTGTGGTGGATTGGCATCAAATGGGTCGCCGGTGGACA 5416 >seq10215 Length=77808 Score = 104 bits (114), Expect = 5e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 269121 CTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTT 269180 |||| ||||| | |||| |||||||| || || ||||| || ||||| || || || | Sbjct 33964 CTTA-GGAGAGCGACTAGTAGCTTTTGCTGCGGTTGAAGGCATCTTCTTCTCTGGATCGT 33906 Query 269181 TTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACG 269240 |||| || |||| |||||||||||||||||||| ||||| ||| | || | ||| || | Sbjct 33905 TTGCTGCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCTGGACTCACCTACTCCAATG 33846 Query 269241 AATTGATAAGCAGGGACGAAGGTT 269264 || | || ||||| || | ||||| Sbjct 33845 AACTCATCAGCAGAGATG-AGGTT 33823 >seq9986 Length=217236 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || || ||||| || || ||||| || |||||||| ||||||||||| Sbjct 86584 GGAGAGAG--TGGTGGCGTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCT 86641 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| | Sbjct 86642 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTC 86701 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 86702 ATCAGCAGAGATGA 86715 >seq668 Length=48042 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || ||||| || || ||||| || || ||||| || | ||| ||||| || || ||||| Sbjct 1454 CCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 1395 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || |||||||| || | ||||| ||||| |||||||||||| Sbjct 1394 AGGGTGATGGTCTTACCGGTTAAAGTTTTCACAAAGATCTGCATTTTG 1347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150320641803356