Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq25754 152 7e-32 seq91 134 2e-26 seq47116 91.5 2e-13 >seq25754 Length=59922 Score = 152 bits (168), Expect = 7e-32 Identities = 200/277 (72%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757 ||||||||| || | || || | | ||| | || ||| | |||| ||| |||| || Sbjct 57536 CCCTTTGACATTATTGCAAACCAAATTCTGCAGAGAGGCAGTGTTGATAATCTCAAAACC 57595 Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817 ||| | || || || ||||| ||||||||||| | ||||| || ||| || |||| Sbjct 57596 CACTTTGCCACCAAATGTGCTTGGTTTCCAGTACTCAGGGGAACAAATGGGATTTCCCAT 57655 Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877 || ||||||||||| | || || |||| ||| | ||| |||| || |||||||| || Sbjct 57656 AAGTCCTTTGAGGGAGTAGGGGGCACCCATCTCCACCATGGTCTCTCCAAAGATGGCATT 57715 Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 | | | ||| || || |||| | || || || | ||||||||| || ||||||||||| Sbjct 57716 GAGCCTGGGTTTCTCAACCAGCAGACCAGTATAAAGCTCCACAGCATCTATGTCTCCGTA 57775 Query 8938 AAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | | ||||| ||||| ||||||||||||||| Sbjct 57776 CATCTCTTCAAGTTCAGCAGCCATTTCCTTTTCTCCT 57812 Score = 147 bits (162), Expect = 3e-30 Identities = 183/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || |||| |||||| || | |||||||||||| |||||| ||| |||||||| || Sbjct 58721 CCAATAAGGATGAGCCGTGCGGTCTGAAACAGCCTCTCGTCATCCCAGTCTGGATGCTCC 58780 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 | || || ||||| ||||||| ||||||||| | |||||||| || || ||||||||| Sbjct 58781 TGCTTTAGTACATCACACACTCGGTTGTGTTCACGTAGCCAGATGGTGGCATACATCATG 58840 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 || ||||| ||||| ||||| ||||| ||||| || || | ||| ||||| | Sbjct 58841 AGTCCAGGAACCAGTCCAAAGGCCTCGTGACCCACGGCAAAACGTCGGGACTCGGGTATA 58900 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCG 9852 | ||||| ||| ||||| || || || || |||| | || || || | ||||| Sbjct 58901 TGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGGTAAACCTCACCA 58960 Query 9853 TCAATAATCTG 9863 || | |||||| Sbjct 58961 TCCAGAATCTG 58971 >seq91 Length=139511 Score = 134 bits (148), Expect = 2e-26 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| |||||||| || || | | ||||||| ||| || ||||| Sbjct 104190 TCACCAATCAGGATGAGACGAGTGGTTTGGAAGATTCTTTCGTCATCCCAGTCGGGATGC 104249 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| | |||| | | | || || | ||||||||| | |||||| || || || |||||| Sbjct 104250 TCTTGCTTCATGATAACACATACACGGTTGTGTTCACGGAGCCAAATGGTTGCATACATC 104309 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTT-TCGGG 9788 || | ||| || ||||| || || ||||| ||||| ||||| | | || || || || Sbjct 104310 ATCAAACCTGGGACCAGACCGAAGGCCTCATGACCCACAGCAA-ATTTATGTTCCTCCGG 104368 Query 9789 CACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTC 9848 || | ||||||||| ||| | ||||||||||||||| ||| || || |||| || Sbjct 104369 GACATGTGGAGGATAGTGCATCTCCACCTGGACATCTTTCACCAGCGGAGGGTACACCTC 104428 Query 9849 ACC 9851 ||| Sbjct 104429 ACC 104431 >seq47116 Length=3138 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || || || |||||||| |||| || | || || || || | | Sbjct 2518 CAAATCCAACTTTCCCACCAAATGTGCTGGGCATCCAATATTCAGGAGAACAAATAGCAT 2459 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | |||||||||||||||| || | || || |||| ||| | ||| |||| || || | Sbjct 2458 TTCCCATGAGGCCTTTGAGAGAGTAGGGGGCTCCCATCTCCACAATAGTCTCCCCAAATA 2399 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGATG 8929 |||||||| | || || |||| |||||| || | |||| ||| || || || | Sbjct 2398 CAGCGTTGGGTCTAGGTTTCTCCA-CAAGAAGGCCAGGATACAGCTCAACCGCATCTACA 2340 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTT 8978 | ||||| || | | |||||| | || | ||||| |||||||||| Sbjct 2339 TGACCGTACAGCTTCTTCAGTTCGTCTGCCAGCTCCTTGTCTCCTGTTT 2291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707877766296080