Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq23339 104 2e-17 seq2134 93.3 4e-14 >seq23339 Length=10106 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | |||| ||||| |||||| || || || || || | ||| || ||| | Sbjct 3424 CCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 3365 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || ||||||| || || ||||| || || ||| Sbjct 3364 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 3305 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || ||||||||||| | || ||||||||||| Sbjct 3304 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGAC 3273 >seq2134 Length=159448 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| || |||| ||| |||| |||||| || Sbjct 26244 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAACTGTTTGCCA 26303 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| || | ||||| || |||||||| ||||| ||||| | || || ||||| Sbjct 26304 GCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 26363 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| | | ||||| || |||| | || |||| |||||||| || ||||| | || Sbjct 26364 ACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGT 26422 Query 94990 TTTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 26423 CTTTACGAAGATCTGCAT 26440 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||| ||||| || | || || ||||| || | ||| || ||| || |||| || Sbjct 26682 CGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTGCGAC 26739 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| |||||| || | ||||| | | ||||| || |||||||| ||||| | Sbjct 26740 CATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCT 26799 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTG 94969 |||| | || || ||||| ||| | | ||||| || |||| | || |||| ||| Sbjct 26800 TGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTG 26858 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| | || || || ||||||||||| Sbjct 26859 ATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 26915 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTGCGACCATCT 26972 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || | ||||| | | ||||| || |||||||| ||||| ||||| Sbjct 26973 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27032 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGT 94974 | || || ||||| ||| | | ||||| || |||| | || |||| |||||||| Sbjct 27033 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTGATGGT 27091 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | || || || ||||||||||| Sbjct 27092 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 27143 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTGCGACCATCT 27200 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || | ||||| | | ||||| || |||||||| ||||| ||||| Sbjct 27201 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27260 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGT 94974 | || || ||||| ||| | | ||||| || |||| | || |||| |||||||| Sbjct 27261 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTGATGGT 27319 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | || || || ||||||||||| Sbjct 27320 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 27371 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTGCGACCATCT 27428 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || | ||||| | | ||||| || |||||||| ||||| ||||| Sbjct 27429 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27488 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGT 94974 | || || ||||| ||| | | ||||| || |||| | || |||| |||||||| Sbjct 27489 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTGATGGT 27547 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | || || || ||||||||||| Sbjct 27548 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 27599 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTGCGACCATCT 27656 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || | ||||| | | ||||| || |||||||| ||||| ||||| Sbjct 27657 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27716 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGT 94974 | || || ||||| ||| | | ||||| || |||| | || |||| |||||||| Sbjct 27717 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTGATGGT 27775 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | || || || ||||||||||| Sbjct 27776 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 27827 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTGCGACCATCT 27884 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || | ||||| | | ||||| || |||||||| ||||| ||||| Sbjct 27885 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27944 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGT 94974 | || || ||||| ||| | | ||||| || |||| | || |||| |||||||| Sbjct 27945 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTGATGGT 28003 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | || || || ||||||||||| Sbjct 28004 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 28055 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTGCGACCATCT 28112 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || | ||||| | | ||||| || |||||||| ||||| ||||| Sbjct 28113 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28172 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGT 94974 | || || ||||| ||| | | ||||| || |||| | || |||| |||||||| Sbjct 28173 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTGATGGT 28231 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | || || || ||||||||||| Sbjct 28232 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 28283 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTGCGACCATCT 28340 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || | ||||| | | ||||| || |||||||| ||||| ||||| Sbjct 28341 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28400 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGT 94974 | || || ||||| ||| | | ||||| || |||| | || |||| |||||||| Sbjct 28401 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTGATGGT 28459 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | || || || ||||||||||| Sbjct 28460 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 28511 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTGCGACCATCT 28568 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || | ||||| | | ||||| || |||||||| ||||| ||||| Sbjct 28569 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28628 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGT 94974 | || || ||||| ||| | | ||||| || |||| | || |||| |||||||| Sbjct 28629 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC-GCTTGGTTCCACCTCAAGAGTGATGGT 28687 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| | || || || ||||||||||| Sbjct 28688 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | || || ||||| || | ||| || ||| || ||| ||| || Sbjct 26459 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 26518 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| || ||||||| | | ||||| || || ||||| ||||| ||||| | Sbjct 26519 CAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTG 26578 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||||| | | ||||| | | || || |||| |||||||| || Sbjct 26579 GATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTT 26638 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || || ||||||||||| Sbjct 26639 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447881814872520