Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8573 127 1e-24 seq38686 111 1e-19 seq3046 111 1e-19 seq6613 109 4e-19 seq11291 98.7 7e-16 >seq8573 Length=88765 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 49275 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGT 49216 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 49215 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 49181 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 86759 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGT 86700 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 86699 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 86665 >seq38686 Length=40144 Score = 111 bits (122), Expect = 1e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 38007 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGGTCTCGT 37948 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 37947 GACGGTATTTAGCCTT 37932 >seq3046 Length=121806 Score = 111 bits (122), Expect = 1e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 75222 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGGTCTCGT 75163 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 75162 GACGGTATTTAGCCTT 75147 >seq6613 Length=416994 Score = 109 bits (120), Expect = 4e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||| || || || | || || ||||| ||||||||| || || || Sbjct 60276 CCAACTAAGTTTTTTGGCTGTGAGTTGGGGGCGCAGACTCAGTTTGATGCTAAGAATGAC 60335 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 ||||||||||| |||||||| ||| | | ||| ||||||||| | || || || ||| Sbjct 60336 CGCTTCATCGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGATGGATTT 60395 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || ||||||||||||||||| ||||| || || || ||||| || || Sbjct 60396 ATCCGCAAGTTTGTGCTGTGCTCCGAATGTGACAATCCTGAGACTGACCT 60445 >seq11291 Length=25512 Score = 98.7 bits (108), Expect = 7e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || | || || || || ||||| ||| ||| || || Sbjct 12684 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTCGATTCCAAGAATGAC 12625 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| || ||||| ||| | | ||| ||||| ||| | || || || || Sbjct 12624 CGCTACATCGTCAATGGATCTCATGAGGCAAACAAACTGCAAGACATGCTAGATGGATTC 12565 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||||||||||||||||||| |||||||| || || || || || Sbjct 12564 ATTCGCAAGTTTGTGCTGTGTCCTGAATGCGACAATCCTGAAACTGA 12518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334648968979367