Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2134 116 3e-21 seq23339 104 2e-17 >seq2134 Length=159448 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| ||||| || || ||||||| | || || ||| | Sbjct 26668 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGC 26609 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| |||||||||||||| Sbjct 26608 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCTGACCAG 26549 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || ||||| || ||||||| ||||| || ||| ||||| Sbjct 26548 CAGCGTCTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGACTACAAC 26489 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | ||||| Sbjct 26488 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCT 26457 >seq23339 Length=10106 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| ||||||||||| ||||| |||||||| Sbjct 3258 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 3317 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| |||||||| | ||||||| ||||| || ||| ||||| Sbjct 3318 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAAC 3377 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| ||||| | || | ||||| | || |||||||| Sbjct 3378 ATTCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTCAGAGGAGG 3424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432942172467455