Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2134 127 2e-24 seq23339 82.4 6e-11 >seq2134 Length=159448 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| |||||||| || || | || || || || |||| ||||| || || Sbjct 28954 GTAAAGATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAG 28895 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || || |||| || || ||||||||||| || ||||| || Sbjct 28894 CCCAGCGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCT 28835 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || ||||| || || || || |||||||| || ||| ||||| | ||||| Sbjct 28834 GACCAGCAGCGTCTGATCTTCGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGAC 28775 Query 22393 TACAACATTCAAAAAGAATCCACCATACAT 22422 |||||||| || || || |||||| | ||| Sbjct 28774 TACAACATCCAGAAGGAGTCCACCCTCCAT 28745 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 26440 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26381 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 26380 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 26321 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 26320 CAGCGTTTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACTCTGTCCGACTACAAC 26261 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || |||||| | ||| | ||| |||| Sbjct 26260 ATCCAGAAGGAGTCCACCCTCCATCTTGTTCTGCG 26226 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 26896 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26837 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 26836 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 26777 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 26776 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 26717 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || |||||| | ||| | || |||| Sbjct 26716 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTGCG 26682 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 27124 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27065 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 27064 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27005 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 27004 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 26945 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 26944 ATCCAGAAGGAGTCCACCCTCCAT 26921 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 27352 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27293 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 27292 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27233 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 27232 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27173 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 27172 ATCCAGAAGGAGTCCACCCTCCAT 27149 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 27580 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27521 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 27520 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27461 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 27460 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27401 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 27400 ATCCAGAAGGAGTCCACCCTCCAT 27377 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 27808 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27749 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 27748 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27689 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 27688 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27629 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 27628 ATCCAGAAGGAGTCCACCCTCCAT 27605 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 28036 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27977 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 27976 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27917 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 27916 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27857 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 27856 ATCCAGAAGGAGTCCACCCTCCAT 27833 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 28264 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28205 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 28204 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28145 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 28144 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 28085 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 28084 ATCCAGAAGGAGTCCACCCTCCAT 28061 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 28492 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28433 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 28432 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28373 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 28372 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 28313 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 28312 ATCCAGAAGGAGTCCACCCTCCAT 28289 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||||||||| |||||| | | | Sbjct 28720 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28661 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || || || Sbjct 28660 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28601 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 28600 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 28541 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 28540 ATCCAGAAGGAGTCCACCCTCCAT 28517 >seq23339 Length=10106 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || || |||| ||| || || ||||| || || ||||| || || || Sbjct 3257 CGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 3316 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| ||||||||| | || ||| ||||| | ||||| ||||| Sbjct 3317 GCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAA 3376 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||||| ||||| |||||| | || | || |||| | | ||||||| Sbjct 3377 CATTCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTCAGAGGAGGTT 3426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419354281665205