Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2134 125 6e-24 seq23339 82.4 6e-11 >seq2134 Length=159448 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || ||| | ||| | || || || || || |||||||| ||| | Sbjct 26214 CCCCCACGAAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 26273 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| ||| |||||| | ||||| |||||| |||| | |||||| ||||| |||||| Sbjct 26274 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGA 26333 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| ||||| ||||| |||| | |||| ||||||| | | ||| || Sbjct 26334 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 26393 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| |||| || ||||| || |||||||| Sbjct 26394 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| | ||||||||| Sbjct 28752 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAACTGTTTACCA 28811 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| || Sbjct 28812 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 28871 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | || | || ||||| ||||| || Sbjct 28872 ACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTC 28931 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 28932 TTCACAAAAATCTGCAT 28948 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || || || || |||||||| ||| Sbjct 26667 ATACCACCCCTGAGGCGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 26726 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| | ||||| |||||| |||| |||||||| ||||| ||| Sbjct 26727 GACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGA 26786 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| |||| | |||| ||||||| | | ||| Sbjct 26787 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCC 26846 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| |||| || ||||| || |||||||| Sbjct 26847 ACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| | ||||| ||| Sbjct 26928 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCA 26987 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 26988 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 27047 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||| || || | || | || ||||| |||| || Sbjct 27048 ACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 27107 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 27108 TTTACGAAGATCTGCAT 27124 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| | ||||| ||| Sbjct 27156 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCA 27215 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 27216 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 27275 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||| || || | || | || ||||| |||| || Sbjct 27276 ACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 27335 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 27336 TTTACGAAGATCTGCAT 27352 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| | ||||| ||| Sbjct 27384 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCA 27443 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 27444 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 27503 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||| || || | || | || ||||| |||| || Sbjct 27504 ACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 27563 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 27564 TTTACGAAGATCTGCAT 27580 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| | ||||| ||| Sbjct 27612 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCA 27671 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 27672 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 27731 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||| || || | || | || ||||| |||| || Sbjct 27732 ACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 27791 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 27792 TTTACGAAGATCTGCAT 27808 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| | ||||| ||| Sbjct 27840 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCA 27899 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 27900 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 27959 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||| || || | || | || ||||| |||| || Sbjct 27960 ACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 28019 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 28020 TTTACGAAGATCTGCAT 28036 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| | ||||| ||| Sbjct 28068 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCA 28127 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 28128 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 28187 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||| || || | || | || ||||| |||| || Sbjct 28188 ACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 28247 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 28248 TTTACGAAGATCTGCAT 28264 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| | ||||| ||| Sbjct 28296 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCA 28355 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 28356 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 28415 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||| || || | || | || ||||| |||| || Sbjct 28416 ACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 28475 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 28476 TTTACGAAGATCTGCAT 28492 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| | ||||| ||| Sbjct 28524 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCA 28583 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 28584 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 28643 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||| || || | || | || ||||| |||| || Sbjct 28644 ACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 28703 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 28704 TTTACGAAGATCTGCAT 28720 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| | ||||||||| Sbjct 26472 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAACTGTTTACCA 26531 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| || ||||||||||| ||||| ||||| || Sbjct 26532 GCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 26591 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | || | || ||||| |||| || Sbjct 26592 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTC 26651 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 26652 TTTACGAAGATCTGCAT 26668 >seq23339 Length=10106 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| ||||||||||| ||| || || || |||||| || ||||| ||| Sbjct 3394 GTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCA 3335 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||||||||| |||||| || Sbjct 3334 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCCTTG 3275 Query 114306 AGCTGTTCAACGGTGTCG 114323 | | |||| ||||||| Sbjct 3274 ACATTCTCAATGGTGTCG 3257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419760319813884