Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq72329 107 2e-18 seq4762 107 2e-18 >seq72329 Length=2074 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || ||||| | || |||| ||| || || | || | |||||||||||||| || || Sbjct 881 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 940 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| ||| ||||| || || | ||| |||||||| || || | ||||||||| | Sbjct 941 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 1000 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400 |||||||| || |||||| || ||||| || | |||||||| Sbjct 1001 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATCAA 1044 >seq4762 Length=89736 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || ||||| | || |||| ||| || || | || | |||||||||||||| || || Sbjct 82756 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 82815 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| ||| ||||| || || | ||| |||||||| || || | ||||||||| | Sbjct 82816 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 82875 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400 |||||||| || |||||| || ||||| || | |||||||| Sbjct 82876 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATCAA 82919 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || ||||| | || |||| ||| || || | || | |||||||||||||| || || Sbjct 87089 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 87148 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| ||| ||||| || || | ||| |||||||| || || | ||||||||| | Sbjct 87149 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 87208 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400 |||||||| || |||||| || ||||| || | |||||||| Sbjct 87209 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATCAA 87252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440969732841880