Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9986 89.7 6e-13 seq19305 84.2 3e-11 >seq9986 Length=217236 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | |||||||||||| |||||| ||||| |||||||| || | ||||| Sbjct 86717 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86658 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 | | ||||||||| | | ||| || || || ||||||||||| ||||| Sbjct 86657 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCAC 86609 >seq19305 Length=42216 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 114556 |||||||||| |||||||||| || || || ||||| || || | | | |||||| Sbjct 24629 CTCATCCTTACTGGTGTACTCTACTATCTCTGTGCACAAGTTACTGGATT--TGATGGTG 24686 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| ||||| || || ||| || || |||||||||||||||||||| || || Sbjct 24687 CCCAGGTTCTGCTGGTTGCTCTTGCGATTGCAGGCATCCTTGTAAAGCATGTAGGGTGTG 24746 Query 114617 CCCGTCTCCGTTTGGGACT 114635 || ||||| || || |||| Sbjct 24747 CCGGTCTCTGTCTGAGACT 24765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596808089225560