Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2134 105 7e-18 seq19305 89.7 5e-13 seq9986 86.0 6e-12 >seq2134 Length=159448 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| ||| | ||| | | | |||||||| || |||||||||||| Sbjct 26213 GCCCCCACGAAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 26272 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || || || | ||||| || | |||| | |||||| ||||| ||||| Sbjct 26273 CAGAGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGG 26332 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || |||| | || | ||||||| | | ||||| Sbjct 26333 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCAC 26392 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| || ||||| || |||||||| Sbjct 26393 CTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | |||||||| | Sbjct 28755 GACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAACTGTTTACCAGCG 28814 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 28815 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACA 28874 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| ||||| | || | || || |||||||| || || Sbjct 28875 TTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTC 28934 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 28935 ACAAAAATCTGCAT 28948 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | |||||||| || |||||||||||| || || || Sbjct 26682 CGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCA 26741 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||||| || | |||| |||||||| ||||| ||||| || ||||| ||| Sbjct 26742 TCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 26801 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || |||| | || | ||||||| | | |||||||| | || | Sbjct 26802 TCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATG 26861 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||||| || ||||| || |||||||| Sbjct 26862 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | |||||||| | | Sbjct 26475 GACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAACTGTTTACCAGCA 26534 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || ||||| ||||| ||| || || | Sbjct 26535 AAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 26594 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| ||||| | || | || || ||||||| || ||| Sbjct 26595 TTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTT 26654 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 26655 ACGAAGATCTGCAT 26668 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | ||||| || | Sbjct 26931 GACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCG 26990 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 26991 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACG 27050 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||||| | || | || || ||||||| || ||| Sbjct 27051 TTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTT 27110 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 27111 ACGAAGATCTGCAT 27124 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | ||||| || | Sbjct 27159 GACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCG 27218 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 27219 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACG 27278 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||||| | || | || || ||||||| || ||| Sbjct 27279 TTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTT 27338 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 27339 ACGAAGATCTGCAT 27352 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | ||||| || | Sbjct 27387 GACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCG 27446 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 27447 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACG 27506 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||||| | || | || || ||||||| || ||| Sbjct 27507 TTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTT 27566 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 27567 ACGAAGATCTGCAT 27580 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | ||||| || | Sbjct 27615 GACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCG 27674 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 27675 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACG 27734 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||||| | || | || || ||||||| || ||| Sbjct 27735 TTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTT 27794 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 27795 ACGAAGATCTGCAT 27808 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | ||||| || | Sbjct 27843 GACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCG 27902 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 27903 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACG 27962 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||||| | || | || || ||||||| || ||| Sbjct 27963 TTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTT 28022 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28023 ACGAAGATCTGCAT 28036 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | ||||| || | Sbjct 28071 GACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCG 28130 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 28131 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACG 28190 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||||| | || | || || ||||||| || ||| Sbjct 28191 TTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTT 28250 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28251 ACGAAGATCTGCAT 28264 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | ||||| || | Sbjct 28299 GACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCG 28358 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 28359 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACG 28418 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||||| | || | || || ||||||| || ||| Sbjct 28419 TTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTT 28478 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28479 ACGAAGATCTGCAT 28492 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | ||||| || | Sbjct 28527 GACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCG 28586 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || |||| Sbjct 28587 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACG 28646 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||||| | || | || || ||||||| || ||| Sbjct 28647 TTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTT 28706 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28707 ACGAAGATCTGCAT 28720 >seq19305 Length=42216 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| || ||||| | ||| | ||| ||| |||| ||| ||||| || ||||| | Sbjct 24643 TGTACTCTACTATCTCTGTGCACAAGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGGT 24702 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| ||||||||||| || || ||| | |||||||| ||| ||||||||| Sbjct 24703 TGCTCTTGCGATTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 24754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 153303 GCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTG 153362 ||||| || ||||| | ||| | || | ||||| ||||| || ||| ||| | ||| Sbjct 23876 GCCAGCTCACAGCTGGACTCCAAGGCAGCGTAGTAGATGGTCTCAAAGATCTGTGTGTTG 23935 Query 153363 AGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGA 153422 |||| || ||| |||||||| | || | ||||| || | ||||||||||||||| Sbjct 23936 AGAAGTTGAGCCTCTGCGCTCTCGAAGGGGAAGCGCATGAGAATGAAGGCGTCGGCCAGA 23995 Query 153423 CCCTGGATACCGACGCCGATGGG 153445 ||||| | ||| | ||||||||| Sbjct 23996 CCCTGAACACCAATGCCGATGGG 24018 >seq9986 Length=217236 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 52764 AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAG 52823 || || ||||| |||||| | |||||||| | ||||||||||||||||| || |||||| Sbjct 88815 AACCCTTTTGACTTTATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTTGAGAAG 88874 Query 52824 CGAGTCGGCGAGTATAAGCG 52843 ||||| |||||||| |||| Sbjct 88875 CGAGTTGGCGAGTACCAGCG 88894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495809206973040