Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2134 111 1e-19 >seq2134 Length=159448 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| ||||| || || || || |||||||| ||| ||| | | | ||||| Sbjct 26231 AACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCTTC 26290 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || |||||||||||| | ||||||||||| ||||| ||||| ||||||||||| Sbjct 26291 CAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 26350 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||||| | || || || ||||| ||| || || | || ||||| || Sbjct 26351 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 26410 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || ||||| || || |||||| Sbjct 26411 GCCAGTCAAGGTCTTTACGAAGATCTGCATA 26441 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 26693 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 26752 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 26753 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 26812 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || || || ||||| ||| || || | || ||||| || || || Sbjct 26813 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 26872 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 26873 CAAGGTCTTTACGAAGATCTGCATA 26897 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 26921 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 26980 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 26981 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27040 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || || || ||||| ||| || || | || ||||| || || || Sbjct 27041 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 27100 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 27101 CAAGGTCTTTACGAAGATCTGCATA 27125 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 27149 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 27208 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 27209 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27268 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || || || ||||| ||| || || | || ||||| || || || Sbjct 27269 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 27328 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 27329 CAAGGTCTTTACGAAGATCTGCATA 27353 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 27377 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 27436 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 27437 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27496 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || || || ||||| ||| || || | || ||||| || || || Sbjct 27497 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 27556 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 27557 CAAGGTCTTTACGAAGATCTGCATA 27581 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 27605 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 27664 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 27665 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27724 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || || || ||||| ||| || || | || ||||| || || || Sbjct 27725 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 27784 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 27785 CAAGGTCTTTACGAAGATCTGCATA 27809 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 27833 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 27892 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 27893 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 27952 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || || || ||||| ||| || || | || ||||| || || || Sbjct 27953 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 28012 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 28013 CAAGGTCTTTACGAAGATCTGCATA 28037 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 28061 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 28120 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 28121 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 28180 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || || || ||||| ||| || || | || ||||| || || || Sbjct 28181 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 28240 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 28241 CAAGGTCTTTACGAAGATCTGCATA 28265 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 28289 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 28348 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 28349 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 28408 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || || || ||||| ||| || || | || ||||| || || || Sbjct 28409 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 28468 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 28469 CAAGGTCTTTACGAAGATCTGCATA 28493 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 28517 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTCCAACTG 28576 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 28577 TTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 28636 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||| | || || || ||||| ||| || || | || ||||| || || || Sbjct 28637 GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGT 28696 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 28697 CAAGGTCTTTACGAAGATCTGCATA 28721 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 28745 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAACTG 28804 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 28805 TTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTT 28864 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||||| || || || | || ||||| || || || Sbjct 28865 GGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTTGCCAGT 28924 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 ||| || || |||||||| ||||| ||| Sbjct 28925 CAGCGTCTTCACAAAAATCTGCATCTTT 28952 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 26465 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAACTG 26524 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | |||| |||||| ||||| |||||| ||||||||||| || || Sbjct 26525 TTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTT 26584 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || ||||| || || || | || ||||| || || || Sbjct 26585 GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGT 26644 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||| Sbjct 26645 CAAGGTCTTTACGAAGATCTGCATA 26669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357073784529245