Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2134 95.1 1e-14 >seq2134 Length=159448 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| | | | ||| Sbjct 28739 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGCGTGCGTCCATCT 28796 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || ||| | |||| || |||||||| || ||||||||||| || ||| Sbjct 28797 TCCAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 28856 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || || |||| || | ||||||| | ||| || || || || | || Sbjct 28857 TGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTC 28916 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || || || |||||||| |||||| Sbjct 28917 TTGCCAGTCAGCGTCTTCACAAAAATCTGCATC 28949 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| | || ||| ||||| || || || ||||| ||||| || || ||| Sbjct 26667 ATACCACCCCTGAGGCGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 26726 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | || ||| ||||| ||||| || ||| | |||| || |||||||| | Sbjct 26727 --GACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 26784 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||||||||| || || || || || || | || | || | ||||||| | Sbjct 26785 GAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGT 26843 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| | || ||||| || | || ||||| || || ||||| Sbjct 26844 TCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 89.7 bits (98), Expect = 5e-13 Identities = 166/238 (70%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 45107 TTTTATT-CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 ||| ||| || || || || | || || ||||| || || || ||||| ||||| || | Sbjct 26206 TTTAATTGCCCCCACGAAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGT 26265 Query 45166 AATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223 | ||| ||| | | || ||| ||||| ||||| || ||| | ||||| || ||||| Sbjct 26266 AGTCG--GACAGAGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTG 26323 Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGG 45282 ||| || ||||||||||| || || || || || || | || | || | ||||||| Sbjct 26324 GTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGC 26382 Query 45283 AAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| | || ||||| || | || ||||| || || ||||| Sbjct 26383 TTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| || | || ||| Sbjct 26915 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGTGTGCGACCATCT 26972 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || ||| | |||| || |||||||| || ||||||||||| || || Sbjct 26973 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27032 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || || || | || | || | ||||||| | || || || ||||| | || Sbjct 27033 TGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 27091 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || ||||| Sbjct 27092 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| || | || ||| Sbjct 27143 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGTGTGCGACCATCT 27200 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || ||| | |||| || |||||||| || ||||||||||| || || Sbjct 27201 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27260 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || || || | || | || | ||||||| | || || || ||||| | || Sbjct 27261 TGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 27319 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || ||||| Sbjct 27320 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| || | || ||| Sbjct 27371 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGTGTGCGACCATCT 27428 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || ||| | |||| || |||||||| || ||||||||||| || || Sbjct 27429 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27488 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || || || | || | || | ||||||| | || || || ||||| | || Sbjct 27489 TGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 27547 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || ||||| Sbjct 27548 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| || | || ||| Sbjct 27599 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGTGTGCGACCATCT 27656 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || ||| | |||| || |||||||| || ||||||||||| || || Sbjct 27657 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27716 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || || || | || | || | ||||||| | || || || ||||| | || Sbjct 27717 TGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 27775 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || ||||| Sbjct 27776 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| || | || ||| Sbjct 27827 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGTGTGCGACCATCT 27884 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || ||| | |||| || |||||||| || ||||||||||| || || Sbjct 27885 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27944 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || || || | || | || | ||||||| | || || || ||||| | || Sbjct 27945 TGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 28003 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || ||||| Sbjct 28004 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| || | || ||| Sbjct 28055 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGTGTGCGACCATCT 28112 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || ||| | |||| || |||||||| || ||||||||||| || || Sbjct 28113 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28172 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || || || | || | || | ||||||| | || || || ||||| | || Sbjct 28173 TGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 28231 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || ||||| Sbjct 28232 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| || | || ||| Sbjct 28283 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGTGTGCGACCATCT 28340 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || ||| | |||| || |||||||| || ||||||||||| || || Sbjct 28341 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28400 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || || || | || | || | ||||||| | || || || ||||| | || Sbjct 28401 TGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 28459 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || ||||| Sbjct 28460 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| || | || ||| Sbjct 28511 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGTGTGCGACCATCT 28568 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || ||| | |||| || |||||||| || ||||||||||| || || Sbjct 28569 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28628 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || || || | || | || | ||||||| | || || || ||||| | || Sbjct 28629 TGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 28687 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || ||||| Sbjct 28688 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || || ||||| ||||| || || ||| ||| | | | ||| Sbjct 26459 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGCGTGCGTCCATCT 26516 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| || || | |||| || |||||||| || ||||||||||| || || Sbjct 26517 TCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCC 26576 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || || |||| || | || | ||||||| | ||| || || ||||| | || Sbjct 26577 TGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGT 26635 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || ||||| Sbjct 26636 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451590425027720