Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq25754 104 3e-17 seq11587 98.7 1e-15 seq91 95.1 2e-14 >seq25754 Length=59922 Score = 104 bits (114), Expect = 3e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 8948 ATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATG 9007 || || ||||| || | || || || ||||| |||||||||||| | ||||| || ||| Sbjct 57585 ATCTCAAAACCCACTTTGCCACCAAATGTGCTTGGTTTCCAGTACTCAGGGGAACAAATG 57644 Query 9008 ACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCG 9067 || |||| || ||||| | ||| | || || |||| ||| | ||| |||| || Sbjct 57645 GGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATCTCCACCATGGTCTCTCCA 57704 Query 9068 AAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCG 9127 ||||||||| | | | ||||| || || | | ||||| || || || ||||| || Sbjct 57705 AAGATGGCATTGAGCCTGGGTTTCTCAACCAGCAGACCAGTATAAAGCTCCACAGCATCT 57764 Query 9128 ACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 | ||| || || | |||| | || ||||| || ||||| || |||| || Sbjct 57765 ATGTCTCCGTACATCTCTTCAAGTTCAGCAGCCATTTCCTTTTCTCCTAAAA 57816 Score = 87.8 bits (96), Expect = 3e-12 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 9541 ATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCT 9600 ||| |||| |||||||||| || | |||||| |||| ||||| |||||||| | | Sbjct 58439 ATGTGAAATTCATCAGGCATAAGGGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGAGGAG 58498 Query 9601 ATTCGGTTCTGGTACT-GAAAGGC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCT 9658 || | ||||||||||| |||| || || ||| || | || || ||||| | |||| Sbjct 58499 ATCCTGTTCTGGTACTGGAAACGCTCGT--TGAAGAGAAGTTCAGGATCAAATTTGAGCT 58556 Query 9659 GGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCC 9718 |||| ||| || || || ||||||||||| | | || | ||| || || || || | Sbjct 58557 TAAAGTTGTATCCACTAAGGTGCTGGACATAATCTTCAATCACAATTTTGATCGTCTCAC 58616 Query 9719 CGGTAA 9724 | |||| Sbjct 58617 CTGTAA 58622 >seq11587 Length=30883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 |||||||||| | | || |||||||||||||| || ||||| ||| ||||| | || Sbjct 15369 TAATGATTAGCCTGGCAGTCTGAAACAACTGCTCATCCCCCCAGGTCGGATGTTCTTTTT 15310 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | ||| || || | |||||| || | |||||| | |||||||||||| | | || Sbjct 15309 TCAGGATATCACAAACGCGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTGAGAC 15250 Query 9842 CCGGCACTAAACCAAACACTTC 9863 |||||| | |||||||| || Sbjct 15249 CCGGCAGCAGTCCAAACACCTC 15228 >seq91 Length=139511 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| |||||||||||||| || | |||||| |||| || || || || || || | Sbjct 104201 GATGAGACGAGTGGTTTGGAAGATTCTTTCGTCATCCCAGTCGGGATGCTCTTGCTTCAT 104260 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | | | || || | ||||||||| | ||||| ||||| || |||||||| ||||| || Sbjct 104261 GATAACACATACACGGTTGTGTTCACGGAGCCAAATGGTTGCATACATCATCAAACCTGG 104320 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | ||| || | |||| ||||| ||||| | || || || || | || | Sbjct 104321 GACCAGACCGAAGGCCTCATGACCCACAGCAAATTTATGTTCCTCCGGGACATGTGGAGG 104380 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 ||| |||| | ||||||| ||||| || || || |||| ||||| | | ||| Sbjct 104381 ATAGTGCATCTCCACCTGGACATCTTTCACCAGCGGAGGGTACACCTCACCACCCACAAC 104440 Query 9966 CT 9967 || Sbjct 104441 CT 104442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723067082543800