Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq19305 127 3e-24 >seq19305 Length=42216 Score = 127 bits (140), Expect = 3e-24 Identities = 121/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | |||||||| |||||| || || |||| Sbjct 22447 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGT 22506 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 ||||||| || |||||||| ||||| ||| ||||| || |||||||| ||||| || | Sbjct 22507 GAATGTTGAGGGACTGGCTCTGGTCAATG-AAGGCTCCTCGATCTGCAGCCATCTTTAAG 22565 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||||| || || ||||||||||||||||| Sbjct 22566 ATGGTCTTTTGAGAGATCTCCCACACCGTCTT 22597 Score = 89.7 bits (98), Expect = 8e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| ||||| ||||| || | || ||| | | |||| | ||| | || |||| | Sbjct 22886 CTGAAACTCTCCAGACAGAACTCTGCGCGTGTAAATGTTGCTAGTGTAGGGCTCGATTGA 22945 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||| |||||||| | |||||||| ||| || ||||||||||| ||||| ||||| Sbjct 22946 CTCATTGTTGCCCAGGATCTGAGCTGTGGAAGCAGTGGGCATGGGGGCCAGCAGCAGACT 23005 Query 204316 GTTGCGCACACC 204327 ||| |||||||| Sbjct 23006 GTTACGCACACC 23017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794429054331920