Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2134 143 3e-29 seq23339 104 3e-17 >seq2134 Length=159448 Score = 143 bits (158), Expect = 3e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 46357 ATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATT 46416 || ||| ||||| || | | ||||| || ||||| | || |||||| ||||| || Sbjct 26204 ATTTTAATTGCCCCCACGAAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTT 26263 Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 ||||||||| |||||||| | || || | ||| ||||| ||||| ||||| |||||||| Sbjct 26264 GTAGTCGGACAGAGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTG 26323 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCT 46536 ||| | || | || ||||||||| |||||| ||| | || | | |||||||| Sbjct 26324 GTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCT 26383 Query 46537 CGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||||| || | |||||||| ||||| |||| || || || ||||| ||||| Sbjct 26384 TGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | || |||||| ||||| ||||||||||| || ||||| | Sbjct 26682 CGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCA 26741 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | ||| ||||| ||||| |||| ||||||||||| | || | || |||||| Sbjct 26742 TCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 26801 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | |||||||| | |||||| || | |||||| Sbjct 26802 TCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATG 26861 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||| || || || ||||| ||||| Sbjct 26862 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 26915 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 26974 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| ||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 26975 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27034 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | |||||||| | |||||| || | |||||||| || Sbjct 27035 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27094 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 27095 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 27143 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27202 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| ||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 27203 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27262 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | |||||||| | |||||| || | |||||||| || Sbjct 27263 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27322 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 27323 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 27371 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27430 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| ||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 27431 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27490 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | |||||||| | |||||| || | |||||||| || Sbjct 27491 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27550 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 27551 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 27599 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27658 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| ||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 27659 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27718 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | |||||||| | |||||| || | |||||||| || Sbjct 27719 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27778 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 27779 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 27827 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27886 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| ||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 27887 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27946 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | |||||||| | |||||| || | |||||||| || Sbjct 27947 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28006 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 28007 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 28055 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28114 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| ||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 28115 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28174 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | |||||||| | |||||| || | |||||||| || Sbjct 28175 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28234 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 28235 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 28283 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28342 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| ||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 28343 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28402 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | |||||||| | |||||| || | |||||||| || Sbjct 28403 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28462 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 28463 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 28511 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28570 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| ||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 28571 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28630 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | |||||||| | |||||| || | |||||||| || Sbjct 28631 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28690 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 28691 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 28739 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 28798 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| || || ||||| |||| ||||||||||| | || | || |||||||| Sbjct 28799 CAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 28858 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | |||||||| | || || || | |||||||| || Sbjct 28859 GATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTT 28918 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||| |||||||| || ||||| || ||||| || Sbjct 28919 GCCAGTCAGCGTCTTCACAAAAATCTGCATCTT 28951 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 26459 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 26518 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||| || || || || |||| ||||||||||| | || | || ||||||||| Sbjct 26519 CAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTG 26578 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | |||||||| | || || || | |||||||| || Sbjct 26579 GATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTT 26638 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| || || || ||||| ||||| Sbjct 26639 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 >seq23339 Length=10106 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||||| |||||| ||||| || ||| || || || ||||||||||| Sbjct 3424 CCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 3365 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||| ||||| || || ||||| | ||||||||| | || Sbjct 3364 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 3305 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCT 46536 | || || |||||| |||||| ||||| || | | |||||||| Sbjct 3304 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCT 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564722217227640