Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7185 145 3e-29 seq2056 136 2e-26 seq271 93.3 2e-13 seq2134 87.8 7e-12 >seq7185 Length=177122 Score = 145 bits (160), Expect = 3e-29 Identities = 454/700 (65%), Gaps = 11/700 (2%) Strand=Plus/Plus Query 450910 AGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGG 450969 |||||| ||||||||||| || || ||||||| || ||||| || || | || |||| Sbjct 171231 AGTAGCCATTGGAATTGACCTGGGCACCACCTACTCCTGTGTCGGGGTGTTTCAGCATGG 171290 Query 450970 AAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTT- 451028 ||| || || || || ||||||||||| ||| |||| || || || | || ||| Sbjct 171291 AAAAGTGGAGATCATCGCAAATGACCAGGGAAACAGAACAACACC--CA--GCTATGTTG 171346 Query 451029 ---TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAATG 451085 | || || | || || || | || | || |||||| ||| || Sbjct 171347 CCTTCACTGACACTGAGAGGCTCATTGGAGATGCAGCTAAAAACCAGGTGGCCATGAACC 171406 Query 451086 CCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTG 451145 |||| ||||| || | |||||| || | | |||||| | | || ||||||| | | Sbjct 171407 CCAACAACACCGTGTTTGATGCCAAGAGGCTGATTGGCAGGAAGTTTGATGATCCAATAG 171466 Query 451146 TACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 | || || | || || || | | || | | | | | |||||||| | Sbjct 171467 TGCAGTCTGACATGAAGCACTGGTCCTTCCAAGTCATCAGTGATAGCGGAAAGCCAAAGG 171526 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 ||||||| | || ||||| |||| || || ||| ||||||||||||||| || |||| Sbjct 171527 TTCAAGTCGAATACAAAGGAGAAAACAAGACATTTAATCCTGAAGAAATTTCCTCCATGG 171586 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | || || ||||| || | || ||| ||| | || || || |||||| Sbjct 171587 TCCTGGTGAAGATGAAGGAGATTGCTGAAGCTTATCTGGGGCAGAAGGTGACAAATGCAG 171646 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | || || ||||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 171647 TTATCACAGTTCCTGCCTATTTCAATGACTCGCAGAGGCAAGCCACTAAAGACGCTGGAG 171706 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 || ||||| | ||||| || |||| || || || || || || || || | || | Sbjct 171707 TGATCGCTGGGCTCAATGTCCTCAGAATCATCAACGAGCCCACGGCTGCAGCCATCGCCT 171766 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 | || || | ||| |||| || |||| || | | | ||||| | |||| Sbjct 171767 ACGGCCTTGACAAAGGCAAAG---GAGCAGAACGCAACGTCCTGATCTTTGACCTGGGTG 171823 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 |||| || ||| || | || | ||||||||||| | ||||| || ||||| | Sbjct 171824 GAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGATGGCATCTTTGAGGTGAAGGCCA 171883 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || || |||||||| || || || || |||| || Sbjct 171884 CAGCCGGAGACACTCATCTGGGTGGCGAGGACTTTGACAA 171923 >seq2056 Length=262961 Score = 136 bits (150), Expect = 2e-26 Identities = 452/700 (65%), Gaps = 11/700 (2%) Strand=Plus/Minus Query 450910 AGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGG 450969 |||||| ||||||||||| || || ||||||| || ||||| || || | || |||| Sbjct 221331 AGTAGCCATTGGAATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGG 221272 Query 450970 AAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTT- 451028 ||| || || || || || |||||||| ||| |||| || || || | || ||| Sbjct 221271 AAAAGTGGAGATCATCGCCAATGACCAGGGAAACAGAACAACACC--CA--GCTATGTTG 221216 Query 451029 ---TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAATG 451085 | || || | || || || | || | ||||||||| ||| || Sbjct 221215 CCTTCACTGACACTGAGAGGCTCATTGGAGATGCTGCTAAAAACCAGGTGGCCATGAACC 221156 Query 451086 CCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTG 451145 |||| ||||| || | |||||| || | | |||||| | | || |||||| | Sbjct 221155 CCAACAACACCGTGTTTGATGCCAAGAGGCTGATTGGCAGGAAGTTTGATGACCCAGTAG 221096 Query 451146 TACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 | || || | || || || | | || | | | | | |||||||| | Sbjct 221095 TGCAGTCTGACATGAAGCACTGGTCCTTCCAAGTCATCAGTGATAGCGGAAAGCCAAAGG 221036 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 ||||||| | || ||||| |||| || || ||| ||||||||||||||| || |||| Sbjct 221035 TTCAAGTCGAATACAAAGGAGAAAACAAGACATTTAATCCTGAAGAAATTTCCTCCATGG 220976 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | || || ||||| || | || ||| ||| | || || || |||||| Sbjct 220975 TCCTGGTGAAGATGAAGGAGATTGCTGAAGCTTATCTGGGGCAGAAGGTGACAAATGCAG 220916 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | || || ||||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 220915 TTATCACAGTTCCTGCCTATTTCAATGACTCGCAGAGGCAAGCCACTAAAGACGCTGGAG 220856 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 || ||||| | ||||| || |||| || || || || || || || || | || | Sbjct 220855 TGATCGCTGGGCTCAATGTCCTCAGAATCATCAACGAGCCCACCGCTGCAGCCATCGCCT 220796 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 | || || | ||| |||| || |||| || | | | ||||| | |||| Sbjct 220795 ACGGCCTTGACAAAGGCAAAG---GAGCAGAACGCAACGTCCTGATCTTTGACCTGGGTG 220739 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 |||| || ||| || | || | ||||||||||| | ||||| || ||||| | Sbjct 220738 GAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGATGGCATCTTTGAGGTGAAGGCCA 220679 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || || |||||||| || || || || |||| || Sbjct 220678 CAGCCGGAGACACTCATCTGGGTGGCGAGGACTTTGACAA 220639 Score = 132 bits (146), Expect = 2e-25 Identities = 451/700 (64%), Gaps = 11/700 (2%) Strand=Plus/Plus Query 450910 AGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGG 450969 |||||| ||||||||||| || || ||||||| || ||||| || || | || |||| Sbjct 224260 AGTAGCCATTGGAATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGG 224319 Query 450970 AAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTT- 451028 ||| || || || || || |||||||| ||| |||| || || || | || ||| Sbjct 224320 AAAAGTGGAGATCATCGCCAATGACCAGGGAAACAGAACAACACC--CA--GCTATGTTG 224375 Query 451029 ---TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAATG 451085 | || || | || || || | || | ||||||||| ||| || Sbjct 224376 CCTTCACTGACACTGAGAGGCTCATTGGAGATGCTGCTAAAAACCAGGTGGCCATGAACC 224435 Query 451086 CCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTG 451145 |||| ||||| || | |||||| || | | |||||| | | || |||||| | Sbjct 224436 CCAACAACACCGTGTTTGATGCCAAGAGGCTGATTGGCAGGAAGTTTGATGACCCAGTAG 224495 Query 451146 TACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 | || || | || || || | | || | | | | | |||||||| | Sbjct 224496 TGCAGTCTGACATGAAGCACTGGTCCTTCCAAGTCATCAGTGATAGCGGAAAGCCAAAGG 224555 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 ||||||| | || ||||| |||| || || ||| ||||||||||||||| || |||| Sbjct 224556 TTCAAGTCGAATACAAAGGAGAAAACAAGACATTTAATCCTGAAGAAATTTCCTCCATGG 224615 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | || || ||||| || | || ||| ||| | || || || |||||| Sbjct 224616 TCCTGGTGAAGATGAAGGAGATTGCTGAAGCTTATCTGGGGCAGAAGGTGACAAATGCAG 224675 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | || || ||||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 224676 TTATCACAGTTCCTGCCTATTTCAATGACTCGCAGAGGCAAGCCACTAAAGACGCTGGAG 224735 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 || ||||| | ||||| || |||| || || || || || || || || | || | Sbjct 224736 TGATCGCTGGGCTCAATGTCCTCAGAATCATCAACGAGCCCACCGCTGCAGCCATCGCCT 224795 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 | || || | ||| |||| || |||| || | | | ||||| | |||| Sbjct 224796 ACGGCCTTGACAAAGGCAAAG---GAGCAGAACGCAACGTCCTGATCTTTGACCTGGGTG 224852 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 |||| || ||| || | || | ||||||||||| | ||||| || || || | Sbjct 224853 GAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGATGGCATCTTTGAGGTGAAAGCCA 224912 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || || |||||||| || || || || |||| || Sbjct 224913 CAGCCGGAGACACTCATCTGGGTGGCGAGGACTTTGACAA 224952 >seq271 Length=75332 Score = 93.3 bits (102), Expect = 2e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| ||||||||||| || |||| || ||||||||||| | |||| ||||||| || | Sbjct 23422 TTGGTATTGATCTTGGGACAACCTACTCCTGTGTAGGTGTCTTCCAACATGGAAAAGTTG 23363 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATT 451037 ||||||| || |||||||||||| | || ||||| | ||| || || |||| Sbjct 23362 AAATTATTGCTAATGACCAAGGAAACAGGACCACTCCAAGCTATGTAGCATTCACAGATT 23303 Query 451038 CAGAAAGACTTTTAGGGCAAGCTGCTAAA 451066 |||| ||| | | || | ||||| ||| Sbjct 23302 CAGAGAGATTGATTGGAGATGCTGCGAAA 23274 >seq2134 Length=159448 Score = 87.8 bits (96), Expect = 7e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || |||||||| || ||| || Sbjct 26440 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26381 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || || || |||||||| ||||||||||| || Sbjct 26380 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 26321 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || ||| | || ||||| | |||||||| | ||| || | || || || Sbjct 26320 CAGCGTTTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACTCTGTCCGACTACAAC 26261 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 26260 ATCCAGAAGGA 26250 Score = 87.8 bits (96), Expect = 7e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || |||||||| || || || || ||||| ||||| | Sbjct 28948 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCCAGC 28889 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || ||||| |||||||| ||||||||||| || Sbjct 28888 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 28829 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || ||||| | ||||||||| | || || | || || || Sbjct 28828 CAGCGTCTGATCTTCGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGACTACAAC 28769 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 28768 ATCCAGAAGGA 28758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973869042992156