Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq19305 102 1e-16 seq9986 84.2 3e-11 >seq19305 Length=42216 Score = 102 bits (112), Expect = 1e-16 Identities = 118/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGT 106548 |||||||||| |||||||||| || ||||| |||||||| ||| || || || Sbjct 24629 CTCATCCTTACTGGTGTACTCTACTATCTCTGTGCACAAGTT---ACTGGATTTGATGGT 24685 Query 106549 CCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGT 106608 |||| |||| ||||| ||||| ||||| ||||||||||| ||||||||||| || Sbjct 24686 GCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCAGGCATCCTTGTAAAGCATGTAGGGTGT 24745 Query 106609 CCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 || ||||| ||||| |||| | || || | ||||| Sbjct 24746 GCCGGTCTCTGTCTGAGACTCAATGATGGCATGCCACA 24783 >seq9986 Length=217236 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||||||||||||||||||||||||||| || || | | |||||| |||||| Sbjct 88888 TACTCGCCAACTCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAAGGAAATGTTCTCCATA 88829 Query 117046 AAGTCAAATGGATT 117059 |||||||| || || Sbjct 88828 AAGTCAAAAGGGTT 88815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589442022158680