Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2134 96.9 2e-15 >seq2134 Length=159448 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||| |||||| || || || Sbjct 28758 TCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAACTGTTTACCAGCGAAG 28817 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| ||||| ||||| || Sbjct 28818 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--AT 28875 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || |||||| || | || ||||| || || || || ||||||| Sbjct 28876 TCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCA 28935 Query 34969 CAAAGATCTGCATATT 34984 |||| |||||||| || Sbjct 28936 CAAAAATCTGCATCTT 28951 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||| |||||| || ||||| Sbjct 26478 TCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAACTGTTTACCAGCAAAG 26537 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| ||||| |||||| Sbjct 26538 ATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 26597 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || |||||| || | || ||||| || || || | ||||| || Sbjct 26598 TCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACG 26657 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 26658 AAGATCTGCATA 26669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324344552025096