Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9986 120 3e-22 seq10215 114 1e-20 >seq9986 Length=217236 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | |||||||| |||||||| || | Sbjct 86717 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86658 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| |||||| ||||||||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 86657 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAACG 86598 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 86597 CCACCACTCTCTCCCC 86582 >seq10215 Length=77808 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || | || | ||||||||||| |||||||| | Sbjct 33825 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 33884 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||| | || | |||||| |||||||| ||||| || ||||| || || ||||||| Sbjct 33885 TCAACCAGTAGATGGCAGCAAACGATCCAGAGAAGAAGATGCCTTCAACCGCAGCAAAAG 33944 Query 19103 CAACTAGTCTTTCTCC 19118 | ||||||| ||||| Sbjct 33945 CTACTAGTCGCTCTCC 33960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561595475217480