Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq9435 170 2e-36 seq9267 131 1e-24 seq25011 113 4e-19 seq271 104 2e-16 >seq9435 Length=170980 Score = 170 bits (188), Expect = 2e-36 Identities = 363/542 (67%), Gaps = 0/542 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | |||||||| || ||||| || || | || |||| || || Sbjct 130244 ATTGGCATTGATCTGGGAACCACTTACTCCTGTGTGGGAGTGTTCCAGCATGGCAAGGTG 130185 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||||| ||||||||||| |||||||| |||||| ||||| | ||||| || Sbjct 130184 GAAATCATTGCTAATGATCAAGGAAACAGAACCACTCCAAGCTATGTGGCCTTCACAGAC 130125 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || ||| | |||| ||||| || || | || | | | || || | ||| || Sbjct 130124 ACAGAAAGACTCATTGGAGATGCTGCCAAGAACCAGGTCGCCATGAACCCCAACAACACA 130065 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || |||||||| ||||| | ||||| |||| ||||||||| | || ||| |||| Sbjct 130064 ATATTTGATGCCAAACGGCTGATTGGTAGAAAGTTTAATGATCCAGTGGTCCAGTCAGAC 130005 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACT 550294 ||||||| |||||| ||| | | | | | || ||||| | || ||| | Sbjct 130004 ATGAAGCTTTGGCCCTTCAAGGTCATCAGCGAAGACGGCAAACCAAAAGTTCAAGTTGAG 129945 Query 550295 CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAA 550354 | ||||| || ||| | || || |||| ||||| ||||| || | ||| Sbjct 129944 TACAAAGGAGAGACCAAGACATTCTACCCTGAGGAAATCTCATCCATGGTCCTAGTCAAA 129885 Query 550355 ATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTA 550414 |||| | | | ||| || || | ||||| ||| | |||| || || || || Sbjct 129884 ATGAGAGAGATCGCCGAAGCCTTCCTGGGTCAGAGAGTCAATAATGCTGTCATCACGGTC 129825 Query 550415 CCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGA 550474 || || || |||||||| || || | ||||| || |||||||| || || || || Sbjct 129824 CCGGCCTACTTTAATGATTCGCAGAGGCAAGCAACCAAAGATGCGGGGGTGATCGCCGGT 129765 Query 550475 CTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGAT 550534 | || || || || ||||||||||| ||||| || ||||| |||| ||||| || || Sbjct 129764 TTGAACGTGCTGCGAATTATCAATGAGCCTACAGCCGCTGCCATTGCCTATGGGCTGGAC 129705 Query 550535 AA 550536 || Sbjct 129704 AA 129703 Score = 109 bits (120), Expect = 4e-18 Identities = 510/805 (63%), Gaps = 6/805 (1%) Strand=Plus/Minus Query 551797 CTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGAAGATTTTA 551856 |||| || ||||| ||||| ||||| ||| | ||||| | | ||||||||| |||| Sbjct 129586 CTCACCTGGGTGGGGAAGACTTTGACAATCGGATGGTAAAACACTTTGTTGAAGAGTTTA 129527 Query 551857 AACGAAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAAC 551914 | | || |||| || ||| || || | | ||| | | | || | || Sbjct 129526 AGAGGAAGCACAAGAAGGACATCAGTCAGAATAAG--AGAGCAGTGAGAAGGCTTCGCAC 129469 Query 551915 TGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGA 551974 || ||||||||||| ||| || | || |||||| | ||||| | | ||||| | || Sbjct 129468 GGCCTGCGAAAGAGCTAAAAGAACCCTCTCATCTAGCACTCAGGCTAGCATTGAGATTGA 129409 Query 551975 TTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATAT 552034 ||| | ||||| || || |||| | || | || | ||||| ||||| || | Sbjct 129408 TTCCCTGTTTGAAGGCATCGATTTCTACACTTCCATCACAAGGGCTCGCTTTGAGGAGTT 129349 Query 552035 TTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAA 552094 ||||| ||||| ||| || | || ||||| || | | |||||||||| | || Sbjct 129348 AAACTCTGAGCTCTTCAGAGGCACTCTGGATCCAGTTGAGAAGGCTTTAAGAGATGCCAA 129289 Query 552095 GATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAA 552154 || || || || | | || |||||||| || || || || || || || || || || Sbjct 129288 AATGGACAAGTCTCAGATTCACGAAATTGTTCTGGTCGGCGGCTCCACGAGGATCCCCAA 129229 Query 552155 AATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATC 552213 || | | | || || ||| || |||||| | | | || | || | || | Sbjct 129228 GATCCAGAAGCTTTTGCAGGACTTCTT-CAATGGCAGGGATCTCAACAAGAGCATCAACC 129170 Query 552214 CAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTG 552273 |||| ||||| || || || || || || | || || || || || || | ||| Sbjct 129169 CAGACGAGGCGGTGGCATACGGAGCGGCGGTGCAGGCCGCCATCCTAATGGGCGACACTT 129110 Query 552274 ATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAA 552333 ||||| | || | | | ||| | ||||| ||||||| || || ||| | || | Sbjct 129109 CGGAAAACGTTCAGGACTTGTTGCTTCTGGATGTGGCTCCTCTGTCCCTGGGTATTGAGA 129050 Query 552334 CAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAAT 552393 | | || || | |||||| ||| ||| | | || || || || || || | Sbjct 129049 CCGCAGGTGGAGTCATGACTGCTCTGATCAAACGCAACACCACCATCCCCACCAAGCAGA 128990 Query 552394 CTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAG 552453 | | || |||||||| || ||||| || | | || || || | ||||||| Sbjct 128989 TGCAGATCTTCTCTACGTACTCTGATAACCAGCCGGGCGTCCTGATCCAGGTGTTTGAAG 128930 Query 552454 GAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTC 552513 | || || | || |||||||| ||| || || | ||| | | ||| || | Sbjct 128929 GCGAGAGGGCCATGACCAAAGATAACAATTTGCTCGGCAAATTTGAGCTCACAGGGATCC 128870 Query 552514 CTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAA 552573 | || || || || || || || ||||| || || || || || || ||||||||||| | Sbjct 128869 CCCCGGCCCCACGAGGCGTTCCCCAAATCGAGGTGACCTTTGACATAGATGCCAATGGCA 128810 Query 552574 TTTTGAATGTGACTGCTTGTGATAA 552598 | |||| || ||||| ||| || Sbjct 128809 TCCTGAACGTATCTGCTGTTGACAA 128785 >seq9267 Length=32760 Score = 131 bits (144), Expect = 1e-24 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||| || || || ||||||||||| || || ||||| || || |||| Sbjct 12775 ATGCGGTCATTACTGTGCCTGCGTACTTTAATGACTCTCAGCGCCAAGCCACCAAGGATG 12716 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || |||||||| |||||||||||||||||||| || || ||||| Sbjct 12715 CTGGAACCATTGCCGGCCTTAATGTCCTTCGTATTATCAATGAACCAACAGCGGCTGCCA 12656 Query 550518 TTGCATATGGACTTGATAAA 550537 ||||||||||| | || ||| Sbjct 12655 TTGCATATGGATTGGACAAA 12636 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 ||||||||| ||| | ||||| || || || | |||||| | ||| | || || Sbjct 8185 TGAAGGAGAGAGAGCCATGACTAAGGACAACAACCTACTTGGAAAATTTGAGTTGACTGG 8126 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 || ||||| ||||||||||| || || || ||||||||||| ||||| || || ||||| Sbjct 8125 CATCCCTCCCGCTCCTCGTGGTGTGCCACAGATTGAAGTTACCTTCGACATTGACGCCAA 8066 Query 552569 TGGAATTTTGAATGT 552583 ||| ||| | ||||| Sbjct 8065 TGGCATTCTCAATGT 8051 >seq25011 Length=12621 Score = 113 bits (124), Expect = 4e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 ||||| |||| || | || ||||| || || || |||||||| || || || || || | Sbjct 1003 TTACGAATGCTGTTGTTACGGTACCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACAA 1062 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| ||| |||| || |||||||| || |||||||||||||| ||||||| Sbjct 1063 AGGATGCTGGGACTATCTCTGGTCTCAATGTTCTACGAATTATCAATGAACCGACTGCTG 1122 Query 550512 CTGCACTTGCATATGGACTTGATAA 550536 |||| |||| ||||| || || || Sbjct 1123 CTGCCATTGCCTATGGCCTGGACAA 1147 Score = 113 bits (124), Expect = 4e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 ||||| |||| || | || ||||| || || || |||||||| || || || || || | Sbjct 2289 TTACGAATGCTGTTGTTACGGTACCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACAA 2348 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| ||| |||| || |||||||| || |||||||||||||| ||||||| Sbjct 2349 AGGATGCTGGGACTATCTCTGGTCTCAATGTTCTACGAATTATCAATGAACCGACTGCTG 2408 Query 550512 CTGCACTTGCATATGGACTTGATAA 550536 |||| |||| ||||| || || || Sbjct 2409 CTGCCATTGCCTATGGCCTGGACAA 2433 Score = 89.7 bits (98), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | ||| | || || || |||| ||||| || ||||| || || Sbjct 27 ATGTCAAAGGGACCAGCAGTTGGGATTGACCTAGGGACCACCTACTCCTGTGTGGGGGTC 86 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | ||| |||| ||||||||||| ||||||||||| || || ||||| || || ||| | Sbjct 87 TTTCAACATGGCAAAGTTGAAATCATTGCCAATGACCAGGGCAACAGGACCACACCAAGT 146 Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCA 550154 ||||| | ||||| || |||| | |||| ||||| || ||| |||||| || Sbjct 147 TATGTAGCATTCACAGACTCTGAGAGGCTGATTGGAGATGCTGCCAAAAATCAAGTAGCA 206 Query 550155 CTGGTAATCCTACCAATACTATTTTTG 550181 || || || |||||||| | |||| Sbjct 207 ATG--AACCCCACCAATACAGTCTTTG 231 >seq271 Length=75332 Score = 104 bits (114), Expect = 2e-16 Identities = 162/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 549955 TTATATTTTGACATAAGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAAC 550014 |||| |||| | | ||| | |||||| || | |||| | ||||| ||| | || || Sbjct 23462 TTATTTTTT-ATTTCAGACACAATGTCCAAGGGACCAGCTGTTGGTATTGATCTTGGGAC 23404 Query 550015 CACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCA 550074 || || ||||| ||||| | ||| |||| ||||||||||||||||| ||||| || Sbjct 23403 AACCTACTCCTGTGTAGGTGTCTTCCAACATGGAAAAGTTGAAATTATTGCTAATGACCA 23344 Query 550075 AGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGA-ACATTTAGTTGGTG 550133 ||| ||||| || |||||| ||||| | ||||| || | || | ||| | |||| | Sbjct 23343 AGGAAACAGGACCACTCCAAGCTATGTAGCATTCACAGATTCAGAGAGATTGA-TTGGAG 23285 Query 550134 ATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTG 550181 |||| || ||| | || | | || || || ||||| ||| | |||| Sbjct 23284 ATGCTGCGAAAAACCAGGTCGCTATGAACCCCACCAACACTGTCTTTG 23237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025432416352930