Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9794 239 8e-58 seq5492 201 2e-46 seq69948 158 2e-33 seq6085 131 3e-25 seq19305 104 4e-17 seq9986 102 2e-16 seq2300 93.3 8e-14 >seq9794 Length=54000 Score = 239 bits (264), Expect = 8e-58 Identities = 200/245 (82%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || || ||||| |||||||| ||||| ||||| |||||||| |||| Sbjct 39569 GCTGACAGCCGCTGCTCACGTGCCTCAGGACCTTTTGTTTAAGTTGCGCCACCTGTTCCC 39628 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||||||||| || || |||||||| || |||||||||||||| | ||| ||||| | Sbjct 39629 GCAGAACGGAGGCTGTGTTGGACAGGCCAGCGTTGTCAGACTTCAAACACTTGACTTTGT 39688 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||||| |||||| ||||||||||||| |||||||| ||||| || | |||| Sbjct 39689 CCTCCAGCCGCGAGATGCGCTCCAGTTTGCGCCTTCGGCATTTCGTGGCCGCAAGTCGGT 39748 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACT 241628 | || || | || |||||||| || ||||| ||||||| |||||||||||| |||||| Sbjct 39749 TGCGAAGCCGTTTGCGTTCCGCTTTAATGCGCTCCTGGTTCTCCATGTCGATTGGAGACA 39808 Query 241629 TGGGT 241633 | ||| Sbjct 39809 TTGGT 39813 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/113 (78%), Gaps = 8/113 (7%) Strand=Plus/Plus Query 238928 TGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGTTA 238987 ||||| ||||| |||||| | |||||||||||||| || || |||||||| || ||||| Sbjct 39604 TGTTTAAGTTGCGCCACCTGTTCCCGCAGAACGGAGGCTGTGTTGGACAGGCCAGCGTTG 39663 Query 238988 TCAGACTTGA--------GCATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 |||||||| | | || ||||||||||||| |||||| ||||| || Sbjct 39664 TCAGACTTCAAACACTTGACTTTGTCCTCCAGCCGCGAGATGCGCTCCAGTTT 39716 >seq5492 Length=171549 Score = 201 bits (222), Expect = 2e-46 Identities = 176/219 (80%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||||| ||| ||||| |||||||| || |||| || | ||||||||| ||||||| Sbjct 142911 CATGACCTTCTGCTTGAGCTGGGCCACTTGCTCCCTCAACAGGGACGCGGTGCTGGACAG 142852 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 ||| ||||| |||| ||| || | |||||||| |||||||| | | |||||| ||||| Sbjct 142851 TCCGGCGTTATCAGTCTTTAGGATTTTCACTTTGTCCTCCAGTCTGGAGATGCGCTCCAG 142792 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || || || ||||| |||||||| || | ||||||| || ||||| || ||||| || Sbjct 142791 CTTCCGTCGCCGGCACTTGGTGGCCGCGAGCCGGTTCCTAAGCCTCTTGCGCTCCGCTTT 142732 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGACTTGGG 241632 |||||| ||||||||||||||||||||||| ||| |||| Sbjct 142731 GATGCGCTCCTGGTCCTCCATGTCGATCGGGGACATGGG 142693 >seq69948 Length=1561 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 241390 CTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCG 241449 ||| || || | || || ||| | || ||||| ||| ||||| |||| |||||| |||| Sbjct 1223 CTGGCACCCGTTGCTCACGTGGCTCATGACCTTCTGCTTGAGCTGGGACACCTGCTCCCT 1164 Query 241450 CAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTC 241509 ||| | | ||||| || ||| | | ||| | | ||| || |||||||| ||||| Sbjct 1163 CAGGATGCTGGCGGTGGAGGCCAGGTCCGAGTTCTGGGTCTTCAGAACCTTCACCTTCTC 1104 Query 241510 CTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTT 241569 |||||| |||| ||| || ||||| ||||| |||||| |||| ||| || | |||||| Sbjct 1103 CTCCAGACGCGAGATCCGCTCCAGCTTGCGTTTGCGGCACTTGGAGGCAGCGATGCGGTT 1044 Query 241570 CCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| |||| || |||||||||||||| ||||| |||| |||||| ||||| Sbjct 1043 GCGGAGCTTCTTGCGCTCCGCCTTGATGCGCTCCTGCGTGTCCAGGTCGATTGGAGA 987 >seq6085 Length=40383 Score = 131 bits (144), Expect = 3e-25 Identities = 144/191 (75%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 195731 ACGCACTTTTTGTGGGGCTTGCAGGCA---TCCAGGGAAGGGTCGCTGGAAAACGTGCCC 195787 || |||| ||| || ||||||||||| ||||| || || | |||||| ||||||||| Sbjct 29765 ACTCACTCTTTATGAGGCTTGCAGGCTGGGTCCAGAGAGGGTTTGCTGGAGAACGTGCCC 29824 Query 195788 TTACCACATGGAACACATGGTTTATGGCAATGTGTCTCATAGTTGTTCCCCTTTGTGCAG 195847 | |||| |||||||||||||||||||| | ||| ||| ||||| || || | ||| Sbjct 29825 GTCTCACAGGGAACACATGGTTTATGGCAGTATGTGCTATAATTGTTGCCTTTCTTACAG 29884 Query 195848 TAGTAACCAGGTTTACACGCGCACACTCTGTTGCTGTTTTGAGTGCACGGAGTCACTTCT 195907 || |||| ||||| || ||||| | ||||| | |||||||||||||| ||||| Sbjct 29885 TAAAAACCTGGTTTGCAGGCGCAGTTGCGATTGCTTTCCTGAGTGCACGGAGTAACTTCC 29944 Query 195908 ATCTCATTTTT 195918 | || ||||| Sbjct 29945 ACCTGGTTTTT 29955 >seq19305 Length=42216 Score = 104 bits (114), Expect = 4e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | ||||| ||||||| ||| ||| || |||||||||||||||||| ||| Sbjct 24642 GTGTACTCTACTATCTCTGTGCACAAGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGG 24701 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||||| | ||| | ||||||||| ||||||||||| | ||||||||| ||| Sbjct 24702 -TTGCTCTTGCGATTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTCTGTCTG 24760 Query 213647 GGAC 213650 ||| Sbjct 24761 AGAC 24764 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || || || || || || | | ||||| ||| ||||||||||||||| Sbjct 22886 CTGAAACTCTCCAGACAGAACTCTGCGCGTGTAAATGTTGCTAGTGTAGGGCTCGATTGA 22945 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||| ||||| ||||| ||||| || ||| || ||||||||||| |||| ||| ||||| Sbjct 22946 CTCATTGTTGCCCAGGATCTGAGCTGTGGAAGCAGTGGGCATGGGGGCCAGCAGCAGACT 23005 Query 213038 GTTCCTCACTCCGTGC 213053 ||| | ||| || ||| Sbjct 23006 GTTACGCACACCATGC 23021 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||||| ||| | || || |||||||||||||||||| ||||| |||| ||||| Sbjct 23876 GCCAGCTCACAGCTGGACTCCAAGGCAGCGTAGTAGATGGTCTCAAAGATCTGTGTGTTG 23935 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 || | ||||||| | | |||||| | |||| | ||| | || ||||| Sbjct 23936 AGAAGTTGAGCCTCTGCGCTCTCGAAGGGGAAGCGCATGAGAATGAAGGCGTCGGCCAGA 23995 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTG 213340 ||||| || || ||||||||||| ||||| Sbjct 23996 CCCTGAACACCAATGCCGATGGGCCTGTG 24024 >seq9986 Length=217236 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | ||||||||| | ||||||||| ||| |||||||||| || |||| || Sbjct 86715 TCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 86656 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||||| | || ||||| ||||| |||||||| || |||||||| || ||||| Sbjct 86655 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAACGC 86597 >seq2300 Length=67496 Score = 93.3 bits (102), Expect = 8e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC-- 241471 || ||| | ||| ||||||||||||||||| || ||||| | | ||||| |||| Sbjct 40581 CATGACTTTCTGCTTGAGTTGGGCCACCTGATCGCGCAGCATGTTGGCGGT---GGACGC 40525 Query 241472 -AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 || | | ||| | ||||| || ||| ||||| ||||||||||| | ||| | || Sbjct 40524 GAGCTCGGAGTTCTGCGACTTTAGGTTCTTGACTTTGTCCTCCAGCCGGGAGATCCTCTC 40465 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590 |||||| | | |||||||||| || || | ||||||| | | ||| | || || Sbjct 40464 CAGTTTCCTCTTCCGGCATTTGGATGCGGCGATTCGGTTCCTCATGCGCTTCCTCTCGGC 40405 Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || || ||||| ||||||||| || || || Sbjct 40404 TTTAATCCGCTCCTGACTCTCCATGTCAATGGGGGA 40369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930682112602880