Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq19305 98.7 2e-15 seq10215 93.3 8e-14 seq9986 84.2 4e-11 >seq19305 Length=42216 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 221121 CCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGA 221180 |||| || || ||||| || || || || | | ||| | ||| |||| | || |||| Sbjct 22882 CCACCTGAAACTCTCCAGACAGAACTCTGCGCGTGTAAATGTTGCTAGTGTAGGGCTCGA 22941 Query 221181 TGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCA 221240 | ||| |||||||||||||||||||| ||| || ||||||||||| |||| ||||| Sbjct 22942 TTGACTCATTGTTGCCCAGGATCTGAGCTGTGGAAGCAGTGGGCATGGGGGCCAGCAGCA 23001 Query 221241 GACTGTTGCGCA 221252 ||||||| |||| Sbjct 23002 GACTGTTACGCA 23013 >seq10215 Length=77808 Score = 93.3 bits (102), Expect = 8e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| || ||||| |||||||| || || |||||||| ||| || |||||| Sbjct 33963 TTAGGAGAGCGACTAGTAGCTTTTGCTGCGGTTGAAGGCATCTTCTTCTCTGGATCGTTT 33904 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||| |||| | ||| | ||| || | ||||| || || || ||||| || Sbjct 33903 GCTGCCATCTACTGGTTGAAGAA-AAGAGGCCTGATGCCTGGACTCACCTACTCCAATGA 33845 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 33844 ACTCATCAGCAGAGATGAGG 33825 >seq9986 Length=217236 Score = 84.2 bits (92), Expect = 4e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||| | |||| || |||||||| ||||| || ||||| || || || ||| Sbjct 86579 TTAGGGGAGAGAGTGGTGGCGTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGGTCTTTT 86638 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGA 25988 || | || |||||||| ||| ||| | |||| |||||| || || ||| ||||| || Sbjct 86639 GCTTCTATTTTCTGGCTAAAGAAGA-GAGGACTCATGCCTGGACTCACCTTCTCCAATGA 86697 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 86698 ACTCATCAGCAGAGATGAGG 86717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927996567318080