Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq19305 86.0 7e-12 seq9986 84.2 3e-11 >seq19305 Length=42216 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || ||||| || ||||||||||||||||| || || ||||| Sbjct 24763 TCTCAGACAGAGACCGGCACACCCTACATGCTTTACAAGGATGCCTGCAATCGCAAGAGC 24704 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| |||| || ||||| | || | ||||| || || |||||||| Sbjct 24703 AACCAGCAGAACCTGGGCACCATCAAATCCAGTAACTTGTGCACAGAGATAGTAGAGTAC 24644 Query 76016 ACAGATAAGGATGAG 76030 || |||||||||| Sbjct 24643 ACCAGTAAGGATGAG 24629 >seq9986 Length=217236 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 || || |||||||||||||| |||||| | | || || ||||||||||||||||||||| Sbjct 88815 AACCCTTTTGACTTTATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTTGAGAAG 88874 Query 65503 CGAGTTGGGGACTA 65516 |||||||| || || Sbjct 88875 CGAGTTGGCGAGTA 88888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596024805184160