Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2134 111 1e-19 seq23339 93.3 4e-14 >seq2134 Length=159448 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || ||||| || || || || || || || || || || ||| Sbjct 28949 GATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCCAG 28890 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| ||||| || ||||| || || Sbjct 28889 CGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 28830 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || |||||| |||| ||| | | |||| || || || Sbjct 28829 GCAGCGTCTGATCTTCGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGACTACAA 28770 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| || || || || ||||| Sbjct 28769 CATCCAGAAGGAGTCCACCCTCCATCTGGTG 28739 Score = 107 bits (118), Expect = 2e-18 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 26896 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26837 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 26836 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 26777 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| ||||||| || || |||||| |||| ||| ||| | || |||| || || | Sbjct 26776 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCCGACTACA 26719 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||| || ||||| || || || || ||||| |||| Sbjct 26718 ACATCCAGAAGGAGTCCACCCTCCATCTGGTGCTGCG 26682 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 26440 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26381 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 26380 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 26321 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || |||||| |||| ||| | | |||| || || ||| Sbjct 26320 CAGCGTTTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACTCTGTCCGACTACAAC 26261 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 26260 ATCCAGAAGGAGTCCACCCTCCATCTTG 26233 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 27124 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27065 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 27064 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27005 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| ||||||| || || |||||| |||| ||| ||| | || |||| || || | Sbjct 27004 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCCGACTACA 26947 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || ||||| || || || || ||||| Sbjct 26946 ACATCCAGAAGGAGTCCACCCTCCATCTGGTG 26915 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 27352 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27293 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 27292 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27233 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| ||||||| || || |||||| |||| ||| ||| | || |||| || || | Sbjct 27232 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCCGACTACA 27175 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || ||||| || || || || ||||| Sbjct 27174 ACATCCAGAAGGAGTCCACCCTCCATCTGGTG 27143 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 27580 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27521 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 27520 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27461 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| ||||||| || || |||||| |||| ||| ||| | || |||| || || | Sbjct 27460 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCCGACTACA 27403 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || ||||| || || || || ||||| Sbjct 27402 ACATCCAGAAGGAGTCCACCCTCCATCTGGTG 27371 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 27808 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27749 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 27748 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27689 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| ||||||| || || |||||| |||| ||| ||| | || |||| || || | Sbjct 27688 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCCGACTACA 27631 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || ||||| || || || || ||||| Sbjct 27630 ACATCCAGAAGGAGTCCACCCTCCATCTGGTG 27599 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 28036 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27977 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 27976 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27917 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| ||||||| || || |||||| |||| ||| ||| | || |||| || || | Sbjct 27916 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCCGACTACA 27859 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || ||||| || || || || ||||| Sbjct 27858 ACATCCAGAAGGAGTCCACCCTCCATCTGGTG 27827 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 28264 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28205 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 28204 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28145 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| ||||||| || || |||||| |||| ||| ||| | || |||| || || | Sbjct 28144 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCCGACTACA 28087 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || ||||| || || || || ||||| Sbjct 28086 ACATCCAGAAGGAGTCCACCCTCCATCTGGTG 28055 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 28492 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28433 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 28432 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28373 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| ||||||| || || |||||| |||| ||| ||| | || |||| || || | Sbjct 28372 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCCGACTACA 28315 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || ||||| || || || || ||||| Sbjct 28314 ACATCCAGAAGGAGTCCACCCTCCATCTGGTG 28283 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || ||| | | | Sbjct 28720 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28661 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 28660 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28601 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| ||||||| || || |||||| |||| ||| ||| | || |||| || || | Sbjct 28600 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCG-CACAC-TGTCCGACTACA 28543 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || ||||| || || || || ||||| Sbjct 28542 ACATCCAGAAGGAGTCCACCCTCCATCTGGTG 28511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || || ||| | Sbjct 26668 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGC 26609 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 26608 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCTGACCAG 26549 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || |||||| |||| ||| | | |||| || || ||| Sbjct 26548 CAGCGTCTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGACTACAAC 26489 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || || ||||| Sbjct 26488 ATCCAGAAGGAGTCCACCCTCCATCTGGTG 26459 >seq23339 Length=10106 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||||||| ||||||||||| || || || || || || | ||||||||||| || || Sbjct 3281 AAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAA 3340 Query 24847 ACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAACATTCAAAAGGAATCGACACTAC 24905 ||||||||| || | || ||| |||| || || |||||||| || || || || | | Sbjct 3341 ACAGCTGGAAGA-TGGACGCACACTGTCCGACTACAACATTCAGAAAGAGTCCACCTTGC 3399 Query 24906 ACTTGGTGTTGCG 24918 || ||||| |||| Sbjct 3400 ACCTGGTGCTGCG 3412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449486747887960