Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6613 118 9e-22 seq11291 113 4e-20 >seq6613 Length=416994 Score = 118 bits (130), Expect = 9e-22 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || |||||||| || ||||||||||| | |||| ||||||||||||||| || ||||| Sbjct 60445 AGGTCAGTCTCAGGATTGTCACATTCGGAGCACAGCACAAACTTGCGGATAAATCCATCC 60386 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | || || || ||||| ||||| |||||||| || || || || Sbjct 60385 AGCATGTCCTGCAGTTTGTTGGCTTCATGGGATCCGTTTACGATGAAGCGGTCATTCTTA 60326 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||| | ||| || ||||| |||| ||| || || || |||| || || Sbjct 60325 GCATCAAACTGAGTCTGCGCCCCCAACTCACAGCCAAAAAACTTAGTTGG 60276 >seq11291 Length=25512 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 ||||| || || ||||| ||||| ||||||| |||||||||||| ||||| ||||| ||| Sbjct 12518 TCAGTTTCAGGATTGTCGCATTCAGGACACAGCACAAACTTGCGAATGAATCCATCTAGC 12577 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | ||| || | || | || || || || ||||||||| | || || || ||| || Sbjct 12578 ATGTCTTGCAGTTTGTTTGCCTCATGAGATCCATTGACGATGTAGCGGTCATTCTTGGAA 12637 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 |||| ||| ||||| || |||| ||| || || ||| | || || || Sbjct 12638 TCGAACTGGGTTTGGGCTCCCAACTCACAACCAAAGAATTTGGTGGG 12684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412474013193101