Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2134 116 2e-21 >seq2134 Length=159448 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 26457 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCT 26516 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || || |||||||| || |||||||| | || | || |||||||| Sbjct 26517 TCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCC 26576 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || ||| ||| || |||| || |||||| Sbjct 26577 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTC 26636 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| ||||||||||| Sbjct 26637 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 28737 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCT 28796 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || ||||||||||| || |||||||| | || | || |||||||| Sbjct 28797 TCCAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 28856 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | || ||| ||| || |||| || |||| Sbjct 28857 TGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGG 28914 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || ||||| ||||| |||||||| Sbjct 28915 TCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 28948 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| ||||| || | |||| ||||||||| ||||| ||||| || Sbjct 26670 CCACCCCTGAGGCGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 26729 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| |||| || || || ||||||||||| || |||||||| | || Sbjct 26730 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 26789 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || ||| | || | || | | || || Sbjct 26790 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 26849 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || |||||||| || || | ||||||||| ||||||||||| Sbjct 26850 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 26913 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 26972 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || ||||||||||| || |||||||| | || | || |||||||| Sbjct 26973 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27032 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | || || |||| || |||||| Sbjct 27033 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTC 27092 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| ||||||||||| Sbjct 27093 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 27141 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 27200 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || ||||||||||| || |||||||| | || | || |||||||| Sbjct 27201 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27260 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | || || |||| || |||||| Sbjct 27261 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTC 27320 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| ||||||||||| Sbjct 27321 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 27369 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 27428 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || ||||||||||| || |||||||| | || | || |||||||| Sbjct 27429 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27488 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | || || |||| || |||||| Sbjct 27489 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTC 27548 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| ||||||||||| Sbjct 27549 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 27597 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 27656 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || ||||||||||| || |||||||| | || | || |||||||| Sbjct 27657 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27716 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | || || |||| || |||||| Sbjct 27717 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTC 27776 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| ||||||||||| Sbjct 27777 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 27825 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 27884 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || ||||||||||| || |||||||| | || | || |||||||| Sbjct 27885 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27944 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | || || |||| || |||||| Sbjct 27945 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTC 28004 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| ||||||||||| Sbjct 28005 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 28053 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 28112 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || ||||||||||| || |||||||| | || | || |||||||| Sbjct 28113 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28172 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | || || |||| || |||||| Sbjct 28173 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTC 28232 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| ||||||||||| Sbjct 28233 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 28281 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 28340 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || ||||||||||| || |||||||| | || | || |||||||| Sbjct 28341 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28400 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | || || |||| || |||||| Sbjct 28401 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTC 28460 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| ||||||||||| Sbjct 28461 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 28509 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 28568 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || ||||||||||| || |||||||| | || | || |||||||| Sbjct 28569 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28628 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | || || |||| || |||||| Sbjct 28629 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTC 28688 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| ||||||||||| Sbjct 28689 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || || || | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 26228 CAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATC 26287 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| || || || |||||||||| || |||||||| | || | || |||||||| Sbjct 26288 TTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 26347 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | | || || |||| || ||||| Sbjct 26348 CTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 26407 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||||||||| ||||||||||| Sbjct 26408 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325402808932283