Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq23339 82.4 6e-11 >seq23339 Length=10106 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 8/124 (6%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA- 107707 || ||||||||| | ||| || |||||||| | || | ||| || ||||||||||| Sbjct 3291 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAA 3350 Query 107708 ---GGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| ||| || | |||||||||||||| || ||||| || |||||| |||| Sbjct 3351 GATGGACGC----ACACTGTCCGACTACAACATTCAGAAAGAGTCCACCTTGCACCTGGT 3406 Query 107765 GTTG 107768 | || Sbjct 3407 GCTG 3410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398521647202273