Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2134 107 1e-18 seq23339 104 2e-17 >seq2134 Length=159448 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||||| ||| || ||||| || || || ||||| || || | Sbjct 26670 CCACCCCTGAGGCGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 26729 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||||| | |||| | ||||| || || ||| Sbjct 26730 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 26789 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| |||| || Sbjct 26790 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 26849 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 26850 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| ||| || ||||| || || || ||||| || || | Sbjct 26898 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 26957 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||||| | |||| | ||||| || || ||| Sbjct 26958 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 27017 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| |||| || Sbjct 27018 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 27077 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 27078 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| ||| || ||||| || || || ||||| || || | Sbjct 27126 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27185 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||||| | |||| | ||||| || || ||| Sbjct 27186 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 27245 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| |||| || Sbjct 27246 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 27305 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 27306 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| ||| || ||||| || || || ||||| || || | Sbjct 27354 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27413 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||||| | |||| | ||||| || || ||| Sbjct 27414 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 27473 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| |||| || Sbjct 27474 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 27533 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 27534 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| ||| || ||||| || || || ||||| || || | Sbjct 27582 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27641 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||||| | |||| | ||||| || || ||| Sbjct 27642 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 27701 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| |||| || Sbjct 27702 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 27761 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 27762 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| ||| || ||||| || || || ||||| || || | Sbjct 27810 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27869 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||||| | |||| | ||||| || || ||| Sbjct 27870 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 27929 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| |||| || Sbjct 27930 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 27989 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 27990 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| ||| || ||||| || || || ||||| || || | Sbjct 28038 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 28097 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||||| | |||| | ||||| || || ||| Sbjct 28098 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 28157 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| |||| || Sbjct 28158 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 28217 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 28218 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| ||| || ||||| || || || ||||| || || | Sbjct 28266 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 28325 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||||| | |||| | ||||| || || ||| Sbjct 28326 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 28385 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| |||| || Sbjct 28386 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 28445 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 28446 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| ||| || ||||| || || || ||||| || || | Sbjct 28494 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 28553 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||||| | |||| | ||||| || || ||| Sbjct 28554 AGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 28613 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| |||| || Sbjct 28614 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACC 28673 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| ||||| || || || |||||||| Sbjct 28674 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| || | ||| || ||||| || || || ||||| || || | | |||||| Sbjct 26225 ACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACC 26284 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||||||||| | ||||| | ||||| || || ||||| || || || Sbjct 26285 ATCTTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTT 26344 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | ||||| |||| || |||||||| || Sbjct 26345 GTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGAT 26404 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||| || || || |||||||| Sbjct 26405 GGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 >seq23339 Length=10106 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||||||||||| || | ||||| ||||| |||||||| || || | Sbjct 3424 CCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 3365 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || |||||||||||| | ||||| || ||||| || || ||| Sbjct 3364 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 3305 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTC 29726 || || |||||||| || | ||| |||||| | || | ||||| Sbjct 3304 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC 3258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384876207686037