Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2134 109 5e-19 seq23339 84.2 2e-11 >seq2134 Length=159448 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || || || || || |||||||| ||| || |||| || | ||||| | |||||||| Sbjct 26472 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCA-TCTTCCAACTGTTTACC 26530 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| |||||||||| ||||| || || || |||||||| ||||| || || || Sbjct 26531 AGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 26590 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||| |||| || || |||| ||| | |||||||| ||||| || Sbjct 26591 GACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAAGGT 26650 Query 137394 TTTTACGAATATTTGCATA 137412 |||||||| || |||||| Sbjct 26651 CTTTACGAAGATCTGCATA 26669 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || || || || || |||||||| ||| || |||| || | ||||| | |||||||| Sbjct 28752 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCA-TCTTCCAACTGTTTACC 28810 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| |||||||||| ||||| || ||||| |||||||| ||||| || || || Sbjct 28811 AGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTT 28870 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||| |||| || || |||| || | |||||||| |||| || Sbjct 28871 GACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGT 28930 Query 137394 TTTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 28931 CTTCACAAAAATCTGCAT 28948 >seq23339 Length=10106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | ||||| || | || | || || ||||| || |||||||| ||| | Sbjct 3424 CCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 3365 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| || | ||||| || ||||| |||||| |||||| | ||||| || || || Sbjct 3364 AGTGTGCGTCCA-TCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 3306 Query 137304 TATGCCTTCTTTGTC 137318 |||||||||||||| Sbjct 3305 AATGCCTTCTTTGTC 3291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488097855512400