Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2134 120 6e-22 seq23339 109 1e-18 seq15285 98.7 2e-15 >seq2134 Length=159448 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | || || || | || || || || || ||||| || || || || | Sbjct 26440 TACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 26499 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| | ||||| ||||||||||| || | || || || || | Sbjct 26500 ACAGCGTGCGTCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTG 26559 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || || || ||||| || || | || || | Sbjct 26560 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAA 26619 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || |||||||| ||||| |||||||| || |||||||| Sbjct 26620 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 >seq23339 Length=10106 Score = 109 bits (120), Expect = 1e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| | |||||| || | ||||| || || |||||||| || || || || || Sbjct 3425 ACCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGA 3366 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| ||||||||||| | || || || || || || Sbjct 3365 CAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 3306 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || ||||| || || || |||||||| || ||||| ||||| || || Sbjct 3305 AATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC 3258 >seq15285 Length=16418 Score = 98.7 bits (108), Expect = 2e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 60148 AGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCAT 60207 ||| || |||||||||| | | || |||||| | || ||| | || || ||||||||||| Sbjct 5255 AGCCTTGTGGTGGTACTTTGTTTCCAAAGGTGTGGAGTACCTCGACACTGTGTTTTTCAT 5314 Query 60208 ACTTA-GGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGT 60266 |||| |||| ||||| || || | || || || || |||||||| || | || |||| Sbjct 5315 -CTTACGGAAGAAGTTCAACCAAATCAGCTTCTTGCATGTATATCACCACTGCACCATGT 5373 Query 60267 TTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | | ||| | ||||| |||||| | ||||| || || Sbjct 5374 TCACTCTGTGGTGGATTGGCATCAAATGGGTCGCCGGTGGACA 5416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980908167706323