Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2134 129 4e-25 seq23339 95.1 8e-15 >seq2134 Length=159448 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 26669 ACCACCCCTGAGGCGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 26728 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| ||||| || || || |||| ||||||||| || | || Sbjct 26729 CAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 26788 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||||| ||||| Sbjct 26789 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCA 26847 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 26848 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 26897 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 26897 ACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 26956 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| ||||| || || || |||| ||||||||| || | || Sbjct 26957 CAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 27016 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||||| ||||| Sbjct 27017 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCA 27075 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 27076 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 27125 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 27125 ACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 27184 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| ||||| || || || |||| ||||||||| || | || Sbjct 27185 CAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 27244 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||||| ||||| Sbjct 27245 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCA 27303 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 27304 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 27353 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 27353 ACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 27412 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| ||||| || || || |||| ||||||||| || | || Sbjct 27413 CAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 27472 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||||| ||||| Sbjct 27473 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCA 27531 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 27532 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 27581 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 27581 ACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 27640 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| ||||| || || || |||| ||||||||| || | || Sbjct 27641 CAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 27700 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||||| ||||| Sbjct 27701 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCA 27759 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 27760 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 27809 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 27809 ACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 27868 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| ||||| || || || |||| ||||||||| || | || Sbjct 27869 CAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 27928 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||||| ||||| Sbjct 27929 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCA 27987 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 27988 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 28037 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 28037 ACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 28096 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| ||||| || || || |||| ||||||||| || | || Sbjct 28097 CAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 28156 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||||| ||||| Sbjct 28157 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCA 28215 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 28216 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 28265 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 28265 ACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 28324 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| ||||| || || || |||| ||||||||| || | || Sbjct 28325 CAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 28384 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||||| ||||| Sbjct 28385 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCA 28443 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 28444 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 28493 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 28493 ACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 28552 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| ||||| || || || |||| ||||||||| || | || Sbjct 28553 CAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 28612 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||||| ||||| Sbjct 28613 AATGCCTTCCTTGTCCTGGATCTTGGCCTTTA-CGTTCTCAATGGTGTCGCTTGGTTCCA 28671 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 28672 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 28721 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 26441 ACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 26500 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || ||||| ||||| || ||||| |||| ||||||||| || | || Sbjct 26501 CAGCGTGCGTCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 26560 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| ||||||||| | || | Sbjct 26561 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCGCTGGGCTCAA 26619 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || ||||| |||||||||||| Sbjct 26620 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 26669 Score = 116 bits (128), Expect = 2e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| || || |||||||| ||||| || ||||| | || ||||| || Sbjct 26237 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAACTG 26296 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| || || || |||||||||||||| || | || | ||||| ||||| || || Sbjct 26297 TTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 26356 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | || | || | ||||||||||| |||||| |||| ||||| || || || | Sbjct 26357 -GGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAG 26415 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | || || ||||| |||||||||||| Sbjct 26416 TCAAGGTCTTTACGAAGATCTGCATA 26441 >seq23339 Length=10106 Score = 95.1 bits (104), Expect = 8e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | ||| | ||||| || | ||| |||||| || |||||||| ||||| Sbjct 3425 ACCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGA 3366 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || |||| ||||| || ||||| ||||| | |||||| || | || Sbjct 3365 CAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 3306 Query 33642 CACACCTTCTTTGTC 33656 | ||||||||||| Sbjct 3305 AATGCCTTCTTTGTC 3291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328411327813440