Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq5821 102 3e-18 seq8990 100 9e-18 seq15984 98.7 3e-17 seq2209 98.7 3e-17 seq50668 86.0 2e-13 seq5721 86.0 2e-13 >seq5821 Length=120042 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 24216 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 24275 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 24276 TCCCGGGTTTCGGC 24289 Score = 80.6 bits (88), Expect = 8e-12 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2782 AGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 || ||||||||| |||||||||||||||||||||||||||||| | |||||| ||| || Sbjct 25808 AGGTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTTTCGGC 25866 Score = 80.6 bits (88), Expect = 8e-12 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2782 AGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 || ||||||||| |||||||||||||||||||||||||||||| | |||||| ||| || Sbjct 26774 AGGTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTTTCGGC 26832 >seq8990 Length=132002 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 42788 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 42729 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 42728 CCCGGGTTTCGGC 42716 >seq15984 Length=209909 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 30956 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 30897 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 30896 CCGGGTTTCGGC 30885 >seq2209 Length=98041 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 83717 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 83658 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 83657 CCGGGTTTCGGC 83646 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 85371 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 85312 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 85311 CCGGGTTTCGGC 85300 >seq50668 Length=3374 Score = 86.0 bits (94), Expect = 2e-13 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||| Sbjct 3189 TGGCCGAAATAGCTCAGTTGGGAGAGGGTTAGATTGAAGATCTAAAGGTTCCTGGTTCAA 3130 Query 2827 CCCCGGGCTT 2836 ||||| || Sbjct 3129 TTCCGGGTTT 3120 >seq5721 Length=52157 Score = 86.0 bits (94), Expect = 2e-13 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||| Sbjct 11656 TGGCCGAAATAGCTCAGTTGGGAGAGGGTTAGATTGAAGATCTAAAGGTTCCTGGTTCAA 11597 Query 2827 CCCCGGGCTT 2836 ||||| || Sbjct 11596 TTCCGGGTTT 11587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15836935203765