Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq72329 136 5e-27 seq4762 136 5e-27 >seq72329 Length=2074 Score = 136 bits (150), Expect = 5e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || | |||||| | |||||||||||| || | ||||||||| |||||||| Sbjct 877 CTTGAGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAA 936 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || ||||| || ||||| || || | |||||||||||||||||| | ||| ||||| Sbjct 937 TGGCACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTC 996 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | ||| ||||||||||| | ||||| || |||| ||||| Sbjct 997 TGACACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCAT 1041 >seq4762 Length=89736 Score = 136 bits (150), Expect = 5e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || | |||||| | |||||||||||| || | ||||||||| |||||||| Sbjct 82752 CTTGAGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAA 82811 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || ||||| || ||||| || || | |||||||||||||||||| | ||| ||||| Sbjct 82812 TGGCACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTC 82871 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | ||| ||||||||||| | ||||| || |||| ||||| Sbjct 82872 TGACACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCAT 82916 Score = 136 bits (150), Expect = 5e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || | |||||| | |||||||||||| || | ||||||||| |||||||| Sbjct 87085 CTTGAGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAA 87144 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || ||||| || ||||| || || | |||||||||||||||||| | ||| ||||| Sbjct 87145 TGGCACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTC 87204 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | ||| ||||||||||| | ||||| || |||| ||||| Sbjct 87205 TGACACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCAT 87249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582955151464800