Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2134 116 3e-21 seq23339 87.8 2e-12 >seq2134 Length=159448 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || | || |||| ||| || || || || Sbjct 26249 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCTTCCAACTGTTTGCCAGCGAA 26308 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || ||||||||| |||||| ||| | | Sbjct 26309 GATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTT 26368 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||||||| | ||||| || || || ||||| || || || Sbjct 26369 CTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTAC 26428 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 26429 GAAGATCTGCAT 26440 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| ||| | || |||||| || |||||||| |||| || || || | || Sbjct 26684 CAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATC 26743 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| ||| || || || || |||| ||||||||||| | ||||| || |||||||| Sbjct 26744 TTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 26803 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | | | | |||||||| | ||||||||| | ||||| || Sbjct 26804 CTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGT 26863 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| || || || || |||||||| Sbjct 26864 CTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 26915 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 26974 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| || || || || |||| ||||||||||| | ||||| || ||||||||| Sbjct 26975 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27034 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||||| | ||||||||| | ||||| || || Sbjct 27035 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27094 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 27095 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 27143 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27202 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| || || || || |||| ||||||||||| | ||||| || ||||||||| Sbjct 27203 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27262 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||||| | ||||||||| | ||||| || || Sbjct 27263 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27322 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 27323 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 27371 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27430 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| || || || || |||| ||||||||||| | ||||| || ||||||||| Sbjct 27431 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27490 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||||| | ||||||||| | ||||| || || Sbjct 27491 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27550 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 27551 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 27599 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27658 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| || || || || |||| ||||||||||| | ||||| || ||||||||| Sbjct 27659 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27718 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||||| | ||||||||| | ||||| || || Sbjct 27719 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 27778 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 27779 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 27827 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 27886 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| || || || || |||| ||||||||||| | ||||| || ||||||||| Sbjct 27887 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 27946 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||||| | ||||||||| | ||||| || || Sbjct 27947 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28006 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 28007 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 28055 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28114 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| || || || || |||| ||||||||||| | ||||| || ||||||||| Sbjct 28115 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28174 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||||| | ||||||||| | ||||| || || Sbjct 28175 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28234 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 28235 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 28283 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28342 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| || || || || |||| ||||||||||| | ||||| || ||||||||| Sbjct 28343 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28402 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||||| | ||||||||| | ||||| || || Sbjct 28403 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28462 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 28463 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 28511 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCTTC 28570 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| || || || || |||| ||||||||||| | ||||| || ||||||||| Sbjct 28571 CAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 28630 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||||| | ||||||||| | ||||| || || Sbjct 28631 GATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTCTT 28690 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 28691 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 28739 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 28798 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| ||||| || || |||| ||||||||||| | ||||| || |||||||| Sbjct 28799 CAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 28858 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | | |||||||| | || ||||| | ||||| || || Sbjct 28859 GATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTCTT 28918 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || |||||||| |||||||| Sbjct 28919 GCCAGTCAGCGTCTTCACAAAAATCTGCAT 28948 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 26459 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 26518 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| ||||| ||||| |||| ||||||||||| | |||| || ||||||||| Sbjct 26519 CAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTG 26578 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||||| | || ||||| | ||||| || || Sbjct 26579 GATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTT 26638 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 26639 GCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 >seq23339 Length=10106 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| || || || ||| || ||||||||||| |||| || || || | || Sbjct 3410 CAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATC 3351 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||||||| || || ||||| ||||||| ||||||||| | |||| || || ||||| Sbjct 3350 TTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 3291 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCT 35679 | ||||||| ||| | | | | | |||||||| Sbjct 3290 CTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCT 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450381929649560