Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2134 123 3e-23 seq23339 114 1e-20 >seq2134 Length=159448 Score = 123 bits (136), Expect = 3e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| ||| || || || ||||| ||||| || |||||||||||| Sbjct 26670 CCACCCCTGAGGCGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 26727 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || | ||||||||| || || |||| ||||||||| || || | Sbjct 26728 ACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 26787 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||| | ||||| Sbjct 26788 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCA 26847 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 26848 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 26898 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 26955 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || | ||||||||| || || |||| ||||||||| || || | Sbjct 26956 ACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 27015 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||| | ||||| Sbjct 27016 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCA 27075 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 27076 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 27126 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 27183 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || | ||||||||| || || |||| ||||||||| || || | Sbjct 27184 ACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 27243 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||| | ||||| Sbjct 27244 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCA 27303 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 27304 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 27354 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 27411 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || | ||||||||| || || |||| ||||||||| || || | Sbjct 27412 ACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 27471 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||| | ||||| Sbjct 27472 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCA 27531 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 27532 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 27582 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 27639 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || | ||||||||| || || |||| ||||||||| || || | Sbjct 27640 ACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 27699 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||| | ||||| Sbjct 27700 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCA 27759 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 27760 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 27810 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 27867 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || | ||||||||| || || |||| ||||||||| || || | Sbjct 27868 ACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 27927 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||| | ||||| Sbjct 27928 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCA 27987 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 27988 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 28038 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 28095 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || | ||||||||| || || |||| ||||||||| || || | Sbjct 28096 ACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 28155 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||| | ||||| Sbjct 28156 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCA 28215 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 28216 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 28266 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 28323 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || | ||||||||| || || |||| ||||||||| || || | Sbjct 28324 ACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 28383 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||| | ||||| Sbjct 28384 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCA 28443 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 28444 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 28494 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 28551 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || | ||||||||| || || |||| ||||||||| || || | Sbjct 28552 ACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 28611 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || || | |||||| | ||||| Sbjct 28612 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCA 28671 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 28672 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || || || || ||||| ||||| || |||||||||||| | ||| || Sbjct 26223 AGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGA 26282 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||||||| || || |||||||||||||| || || || |||||||| Sbjct 26283 CCATCTTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCC 26342 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| | |||||| || ||||| Sbjct 26343 TTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTG 26402 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || ||||| || ||||| Sbjct 26403 ATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 26442 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 26501 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | |||||| || ||||| |||| ||||||||| || || || Sbjct 26502 AGCGTGCGTCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGA 26561 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | || || Sbjct 26562 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 26621 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 26622 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 28722 CCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 28781 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | |||||| || || || |||| ||||||||| || || || Sbjct 28782 AGCGTGCGTCCATCTTCCAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 28841 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || ||||| || | |||||| | || || Sbjct 28842 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 28901 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || || ||||| ||||| || Sbjct 28902 TCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCATCTT 28951 >seq23339 Length=10106 Score = 114 bits (126), Expect = 1e-20 Identities = 119/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||||||| |||| ||| ||||| | ||||| || || ||||||||||||||| Sbjct 3424 CCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGG-- 3367 Query 134547 ACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| | || || ||||||||||| ||||| ||||| | |||||| || || | Sbjct 3366 ACAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGG 3307 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 | ||||||||||| || || || ||| ||||| Sbjct 3306 GAATGCCTTCTTTGTCCTGGATCTTTGCCTTGAC 3273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504936863863640