Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9986 123 3e-23 seq10215 114 2e-20 seq19305 89.7 7e-13 >seq9986 Length=217236 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || || |||||||||||||| || || | ||| | Sbjct 86717 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86658 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || | ||||||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 86657 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAACG 86598 Query 39759 CAACAAGTCTCTCTCC 39774 | || | |||||| || Sbjct 86597 CCACCACTCTCTCCCC 86582 >seq10215 Length=77808 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || | |||||||||||||| || || | || | Sbjct 33825 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCT 33884 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| | ||||||||||| |||||||| |||||||||||||| || || ||||| | Sbjct 33885 TCAACCAGTAGATGGCAGCAAACGATCCAGAGAAGAAGATGCCTTCAACCGCAGCAAAAG 33944 Query 39759 CAACAAGTCTCTCTCC 39774 | || |||| |||||| Sbjct 33945 CTACTAGTCGCTCTCC 33960 >seq19305 Length=42216 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || || ||||| | |||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 26213 GTGCCGGCGTTAAAGAGTGTAGGGGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 26272 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||||||||||||| | | || ||| || || || || | | || | ||||| | Sbjct 26273 TAGGTTTCAATAGCTGCTGCAATGTCCTCCTTGTGGATGCCCACGGACACTCTCATCAGC 26332 Query 70111 ATATGCTGAGGTCGTTC 70127 || ||||| || || || Sbjct 26333 ATGTGCTGTGGGCGCTC 26349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686281506297480