Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq72329 100 2e-16 seq4762 100 2e-16 seq10215 95.1 1e-14 seq9986 95.1 1e-14 seq9940 86.0 5e-12 >seq72329 Length=2074 Score = 100 bits (110), Expect = 2e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105 |||||||||||||| || || ||| |||||| |||||||| || | | ||||| || Sbjct 1044 TTGATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGACGGTGAGTTG 985 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || || || |||| || | || |||||||| || || || || || || ||||| || Sbjct 984 TCGTGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCTGGGTGTGCCATTCAACATTGCC 925 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || ||||| || |||||||| ||| Sbjct 924 AGCTACGCACTACTCACCTACATGATTGCCCAC 892 >seq4762 Length=89736 Score = 100 bits (110), Expect = 2e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105 |||||||||||||| || || ||| |||||| |||||||| || | | ||||| || Sbjct 82919 TTGATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGACGGTGAGTTG 82860 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || || || |||| || | || |||||||| || || || || || || ||||| || Sbjct 82859 TCGTGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCTGGGTGTGCCATTCAACATTGCC 82800 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || ||||| || |||||||| ||| Sbjct 82799 AGCTACGCACTACTCACCTACATGATTGCCCAC 82767 Score = 100 bits (110), Expect = 2e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105 |||||||||||||| || || ||| |||||| |||||||| || | | ||||| || Sbjct 87252 TTGATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGACGGTGAGTTG 87193 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || || || |||| || | || |||||||| || || || || || || ||||| || Sbjct 87192 TCGTGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCTGGGTGTGCCATTCAACATTGCC 87133 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || ||||| || |||||||| ||| Sbjct 87132 AGCTACGCACTACTCACCTACATGATTGCCCAC 87100 >seq10215 Length=77808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 |||||| ||||| ||||| || || ||||| | || |||||||| ||||| || |||| Sbjct 33967 ATTCTTA-GGAGAGCGACTAGTAGCTTTTGCTGCGGTTGAAGGCATCTTCTTCTCTGGAT 33909 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 ||||||| ||||| | ||||| |||||| |||| |||||||||| | || | || | Sbjct 33908 CGTTTGCTGCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCTGGACTCACCTACTCCA 33849 Query 44235 ATGAGTTAATAAGTCGTGATGA 44256 |||| | || || | ||||| Sbjct 33848 ATGAACTCATCAGCAGAGATGA 33827 >seq9986 Length=217236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || ||||| ||| | ||||||| || || || ||||| || || ||||| Sbjct 84979 CGATTTACTCAGGAAGTCCAAGTGACAGAAGCCCGTTGCTTCTATGGTTTCCAGATTGCA 85038 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||| || ||||||||||| || | || ||||| |||||||||||| Sbjct 85039 ATGGAAAACATTCACTCTGAAATGTACAGCCTGTTAATTGATACCTACATCAAAGAT 85095 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || ||||| ||| | ||||||| || || || ||||| || || ||||| Sbjct 85854 CGATTTACTCAGGAAGTCCAAGTGACAGAAGCCCGTTGCTTCTATGGTTTCCAGATTGCA 85913 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||| || ||||||||||| || | || ||||| |||||||||||| Sbjct 85914 ATGGAAAACATTCACTCTGAAATGTACAGCCTGTTAATTGATACCTACATCAAAGAT 85970 >seq9940 Length=356404 Score = 86.0 bits (94), Expect = 5e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 47225 TTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGA 47284 ||| ||||||| ||| |||| || |||||| || | ||||| || ||||||||||| ||| Sbjct 206891 TTTGTAGGACTCTATAAAAAGTCGGGGAAATTAGTTTTTCTTGGATTAGACAATGCCGGA 206950 Query 47285 AAAACGGCATTACTCCACATGCTCAAA 47311 ||||| ||||| | |||||||| ||| Sbjct 206951 AAAACAACATTATTGCACATGCTTAAA 206977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397102112257285