Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq19305 93.3 5e-14 seq9986 84.2 3e-11 >seq19305 Length=42216 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||||||| |||||||||| || || ||||||||||| || | || |||||| Sbjct 24629 CTCATCCTTACTGGTGTACTCTACTATCTCTGTGCACAAGTTACTGGA--TTTGATGGTG 24686 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| ||||| || || ||| || || |||||||||||||||||||| || || Sbjct 24687 CCCAGGTTCTGCTGGTTGCTCTTGCGATTGCAGGCATCCTTGTAAAGCATGTAGGGTGTG 24746 Query 118857 CCCGTCTCCGTTTGGGACT 118875 || ||||| || || |||| Sbjct 24747 CCGGTCTCTGTCTGAGACT 24765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || ||| | ||||| ||||| | |||||||||| |||| ||| || |||||||| Sbjct 22917 TAAATGTTGCTAGTGTAGGGCTCGATTGACTCATTGTTGCCCAGGATCTGAGCTGTGGAA 22976 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 118282 || ||||||||||| |||| || || |||||||| | ||| Sbjct 22977 GCAGTGGGCATGGGGGCCAGCAGCAGACTGTTACGCACACC 23017 >seq9986 Length=217236 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||||||||| |||||| || || |||||||| || | ||||| Sbjct 86717 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86658 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 | | ||||||||| | | ||| || ||||| |||||||| || ||||| Sbjct 86657 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCAC 86609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617870437244920