Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq72329 116 3e-21 seq4762 116 3e-21 >seq72329 Length=2074 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 ||||||||||| ||||||||||| |||||||| ||| || |||||||| ||||||||| Sbjct 884 CCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGCACA 943 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || || || || || || | || || ||||| || || | | | | ||||||| Sbjct 944 CCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGACACA 1003 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 ||||| || || | |||| || || |||||||||||| Sbjct 1004 TAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATC 1042 >seq4762 Length=89736 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 ||||||||||| ||||||||||| |||||||| ||| || |||||||| ||||||||| Sbjct 82759 CCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGCACA 82818 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || || || || || || | || || ||||| || || | | | | ||||||| Sbjct 82819 CCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGACACA 82878 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 ||||| || || | |||| || || |||||||||||| Sbjct 82879 TAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATC 82917 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 ||||||||||| ||||||||||| |||||||| ||| || |||||||| ||||||||| Sbjct 87092 CCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGCACA 87151 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || || || || || || | || || ||||| || || | | | | ||||||| Sbjct 87152 CCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGACACA 87211 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 ||||| || || | |||| || || |||||||||||| Sbjct 87212 TAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATC 87250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391596618619291