Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq19305 87.8 2e-12 seq9986 84.2 2e-11 >seq19305 Length=42216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || ||||||||||| ||| || ||||||||||| | ||||| |||||||||||| Sbjct 24654 ATCTCTGTGCACAAGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGA 24713 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||| |||||||| |||||| || || |||||||| Sbjct 24714 TTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 24754 >seq9986 Length=217236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||||||||||||||| ||||| || || | ||||||||||||| Sbjct 86597 GCGTTTGC-TGCAGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCT 86655 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | || |||||||| || || | |||||||| || || || Sbjct 86656 AAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTCAT 86703 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398 ||| | |||||||| |||| ||||||| ||| || ||||| || ||||||||||||||| Sbjct 88809 GTGGAAAACCCTTTTGACTTTATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTT 88868 Query 60399 GAGAAGCGGGTCGGGGATTA 60418 |||||||| || || || || Sbjct 88869 GAGAAGCGAGTTGGCGAGTA 88888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548023880296080