Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq72508 82.4 8e-11 seq10215 82.4 8e-11 >seq72508 Length=2461 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | |||||| ||||| || || || | || || |||||||| Sbjct 260 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTACCGCCATTGATACGGGTACCAAACTGG 201 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||||| |||||| |||||| || ||||| ||||||||||| Sbjct 200 CCAAGAGGCTGAAGAATGTTGACATTGTTGCTGCCCACAAAGTTCTGGGCCAAATTCACG 141 Query 152149 ATCGT 152153 || || Sbjct 140 ATAGT 136 >seq10215 Length=77808 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || | | || |||||||| || || | |||||| Sbjct 33827 TCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCAGGCATCAGGCCTCTTTTCTTC 33886 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| |||||||| || || ||| ||||||||||||||| || ||||| || Sbjct 33887 AACCAGTAGATGGCAGCAAACGATCCAGAGAAGAAGATGCCTTCAACCGCAGCAAAAGCT 33946 Query 74892 ACAAGGCG 74899 || || || Sbjct 33947 ACTAGTCG 33954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546716275508600