Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2134 161 1e-34 seq9986 84.2 2e-11 >seq2134 Length=159448 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 26440 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26381 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 26380 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 26321 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 26320 CAGCGTTTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACTCTGTCCGACTACAAC 26261 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||||||||| || || Sbjct 26260 ATCCAGAAGGAGTCCACCCTCCATCTTGTTCTGCGTCTTCGTGGGGG 26214 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||||| || |||||||| || || |||||||||||| | | Sbjct 28948 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCCAGC 28889 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || |||||||| || |||||||| |||||| Sbjct 28888 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 28829 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || |||||||| || | || |||| || || || | ||||| || Sbjct 28828 CAGCGTCTGATCTTCGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGACTACAAC 28769 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 28768 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 28722 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||||||| | | Sbjct 26668 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGC 26609 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || ||||| || |||||| Sbjct 26608 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCTGACCAG 26549 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||||||||| || | || |||| || || || | ||||| || Sbjct 26548 CAGCGTCTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGACTACAAC 26489 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 26488 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 26442 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 26896 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 26837 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 26836 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 26777 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 26776 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 26717 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 26716 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTGCGCCTCAGGGGTGG 26670 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 27124 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27065 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 27064 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27005 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 27004 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 26945 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 26944 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 26898 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 27352 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27293 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 27292 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27233 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 27232 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27173 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 27172 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 27126 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 27580 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27521 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 27520 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27461 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 27460 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27401 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 27400 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 27354 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 27808 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27749 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 27748 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27689 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 27688 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27629 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 27628 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 27582 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 28036 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 27977 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 27976 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 27917 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 27916 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 27857 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 27856 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 27810 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 28264 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28205 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 28204 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28145 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 28144 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 28085 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 28084 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 28038 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 28492 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28433 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 28432 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28373 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 28372 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 28313 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 28312 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 28266 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || ||||||||||| || || | Sbjct 28720 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGC 28661 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 28660 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 28601 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| || || | || |||| ||| || || | ||||| || Sbjct 28600 CAGCGTCTGATCTTCGCTGGCAAACAGTTGGAAGATGGTCGCACACTGTCCGACTACAAC 28541 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 28540 ATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGGGGTGG 28494 >seq9986 Length=217236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||||||||| |||||||||||||| || |||||||||||||||||| ||| | || Sbjct 86609 GTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCTAAAGAAGAGAGGA 86668 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||||| || || | || || || || || ||| Sbjct 86669 CTCATGCCTGGACTCACCTTCTCCAATGAACTCATC 86704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569789585413840