Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq15285 105 8e-18 seq10726 82.4 9e-11 >seq15285 Length=16418 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 32669 AGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCAT 32728 ||||||||||| || ||| | || |||||| | || || || || ||| | || ||||| Sbjct 5255 AGCCTTGTGGTGGTACTTTGTTTCCAAAGGTGTGGAGTACCTCGACACTGTGTTTTTCAT 5314 Query 32729 AATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTT 32788 | | ||||| || |||||| | ||||| ||||| ||||| ||||| | |||||||| Sbjct 5315 CTTACGGAAGAAGTTCAACCAAATCAGCTTCTTGCATGTATATCACCACTGCACCATGTT 5374 Query 32789 TACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 ||| | | ||||| || || |||||| | || || |||||| Sbjct 5375 CACTCTGTGGTGGATTGGCATCAAATGGGTCGCCGGTGGACAG 5417 >seq10726 Length=61394 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || | ||||| || || | || | ||| || || | |||||||| |||| Sbjct 1057 TGTGGTGGTACTACATCTCGAAGGGAGTGGAGTTTCTGGACACAGTGTTCTTCATCATGA 998 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 | ||||| ||||||||||| ||||| ||||||| || ||||| | || ||||| | Sbjct 997 GGAAGAAGTTTAACCAAGTCAGCTTCCTGCACGTCTATCACCACTGCACAATGTTCATCC 938 Query 32794 TAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 | | ||||| || || || ||| | | || |||||| Sbjct 937 TGTGGTGGATCGGCATCAAGTGGGTCCCTGGCGGACAG 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602629967753680