Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq72329 105 6e-18 seq4762 105 6e-18 >seq72329 Length=2074 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || ||||| || ||||||||||| ||||| || | || Sbjct 893 TGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGCACACCCAGACCA 952 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || || || || |||||||| |||| ||| || | | || || || ||| Sbjct 953 ATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGACACATAAAACTGG 1012 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || | | ||||| ||||| | ||||||| |||||||| Sbjct 1013 CATAACGCATGGCAGGGGGGCAATGCCATCAATGGGAGATC 1053 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||| ||||||| | ||||| ||||| | | ||||| || || || | | Sbjct 1053 GATCTCCCATTGATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGAC 994 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||| |||| |||||||| || || || || || ||||| || | || ||||| ||| Sbjct 993 GGTGAGTTGTCGTGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCTGGGTGTGCCATTC 934 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| || ||||| |||||||| || || Sbjct 933 AACATTGCCAGCTACGCACTACTCACCTACATGATTGCCCA 893 >seq4762 Length=89736 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || ||||| || ||||||||||| ||||| || | || Sbjct 82768 TGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGCACACCCAGACCA 82827 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || || || || |||||||| |||| ||| || | | || || || ||| Sbjct 82828 ATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGACACATAAAACTGG 82887 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || | | ||||| ||||| | ||||||| |||||||| Sbjct 82888 CATAACGCATGGCAGGGGGGCAATGCCATCAATGGGAGATC 82928 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||| ||||||| | ||||| ||||| | | ||||| || || || | | Sbjct 82928 GATCTCCCATTGATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGAC 82869 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||| |||| |||||||| || || || || || ||||| || | || ||||| ||| Sbjct 82868 GGTGAGTTGTCGTGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCTGGGTGTGCCATTC 82809 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| || ||||| |||||||| || || Sbjct 82808 AACATTGCCAGCTACGCACTACTCACCTACATGATTGCCCA 82768 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || ||||| || ||||||||||| ||||| || | || Sbjct 87101 TGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGCACACCCAGACCA 87160 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || || || || |||||||| |||| ||| || | | || || || ||| Sbjct 87161 ATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGACACATAAAACTGG 87220 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || | | ||||| ||||| | ||||||| |||||||| Sbjct 87221 CATAACGCATGGCAGGGGGGCAATGCCATCAATGGGAGATC 87261 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||| ||||||| | ||||| ||||| | | ||||| || || || | | Sbjct 87261 GATCTCCCATTGATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGAC 87202 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||| |||| |||||||| || || || || || ||||| || | || ||||| ||| Sbjct 87201 GGTGAGTTGTCGTGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCTGGGTGTGCCATTC 87142 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| || ||||| |||||||| || || Sbjct 87141 AACATTGCCAGCTACGCACTACTCACCTACATGATTGCCCA 87101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447853041173040