Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3802 89.7 4e-13 seq72329 84.2 2e-11 seq4762 84.2 2e-11 >seq3802 Length=74374 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 3250 TGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGG 3309 ||| |||||||| |||| | || ||||||||||| || || |||||||| |||||||| Sbjct 19652 TGAAGAGCTCTTTAGAGACGAAGTGAACTGGGGGCGGATCGTGGCTTTCTTCGAGTTTGG 19711 Query 3310 TGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGC 3369 ||| ||||| ||||| |||||||| | | || | |||| || || | ||||| Sbjct 19712 TGGGACCATGTGCGTGGAGAGCGTCAACCGGGAGATGGCGTCCCAGGTAGATAGTATTGC 19771 Query 3370 CGCGTGGATGACAGACCAGCTG 3391 |||||||||||| | ||| Sbjct 19772 ACACTGGATGACAGACTACCTG 19793 >seq72329 Length=2074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | | ||||||||| | || || || Sbjct 881 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 940 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||||||||| ||||| | || | |||||||| ||||| || | ||| |||| || Sbjct 941 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 1000 Query 118654 ACATAAAACTG 118664 ||||||||||| Sbjct 1001 ACATAAAACTG 1011 >seq4762 Length=89736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | | ||||||||| | || || || Sbjct 82756 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 82815 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||||||||| ||||| | || | |||||||| ||||| || | ||| |||| || Sbjct 82816 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 82875 Query 118654 ACATAAAACTG 118664 ||||||||||| Sbjct 82876 ACATAAAACTG 82886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | | ||||||||| | || || || Sbjct 87089 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 87148 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||||||||| ||||| | || | |||||||| ||||| || | ||| |||| || Sbjct 87149 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 87208 Query 118654 ACATAAAACTG 118664 ||||||||||| Sbjct 87209 ACATAAAACTG 87219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414107757240148