Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2134 168 2e-36 seq23339 116 9e-21 >seq2134 Length=159448 Score = 168 bits (186), Expect = 2e-36 Identities = 173/225 (77%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || || |||||||| || |||||||| || || | || || Sbjct 26219 ACGAAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 26278 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||| ||||| |||||||| | || || ||||||||||||| || Sbjct 26279 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCC 26338 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069 |||||||||||||||||| || ||||| || |||||||| ||| ||| ||||| Sbjct 26339 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTC 26395 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || | |||||||| || | |||||| Sbjct 26396 AAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 26685 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 26744 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || || || ||||||||||||| |||||||||||| Sbjct 26745 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 26804 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 26805 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTCAAGAGTGATG 26861 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||||| || | |||||| Sbjct 26862 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 26913 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 26972 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || || || ||||||||||||| |||||||||||| Sbjct 26973 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27032 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 27033 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTCAAGAGTGATG 27089 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||||| || | |||||| Sbjct 27090 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 27141 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 27200 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || || || ||||||||||||| |||||||||||| Sbjct 27201 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27260 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 27261 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTCAAGAGTGATG 27317 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||||| || | |||||| Sbjct 27318 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 27369 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 27428 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || || || ||||||||||||| |||||||||||| Sbjct 27429 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27488 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 27489 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTCAAGAGTGATG 27545 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||||| || | |||||| Sbjct 27546 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 27597 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 27656 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || || || ||||||||||||| |||||||||||| Sbjct 27657 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27716 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 27717 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTCAAGAGTGATG 27773 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||||| || | |||||| Sbjct 27774 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 27825 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 27884 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || || || ||||||||||||| |||||||||||| Sbjct 27885 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 27944 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 27945 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTCAAGAGTGATG 28001 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||||| || | |||||| Sbjct 28002 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 28053 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 28112 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || || || ||||||||||||| |||||||||||| Sbjct 28113 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28172 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 28173 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTCAAGAGTGATG 28229 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||||| || | |||||| Sbjct 28230 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 28281 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 28340 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || || || ||||||||||||| |||||||||||| Sbjct 28341 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28400 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 28401 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTCAAGAGTGATG 28457 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||||| || | |||||| Sbjct 28458 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 28509 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGACCATCT 28568 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || || || ||||||||||||| |||||||||||| Sbjct 28569 TCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 28628 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 28629 TGGATCTTGGCCTTTACGTTCTCAATGGTGTC---GCTTGGTTCCACCTCAAGAGTGATG 28685 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||||| || | |||||| Sbjct 28686 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | ||||||| Sbjct 26457 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCT 26516 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| || || || |||||||| |||| |||||||||||| Sbjct 26517 TCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCC 26576 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| | |||||||| |||||||| ||| Sbjct 26577 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTC 26636 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||||| || | |||||| Sbjct 26637 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | ||||||| Sbjct 28737 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCT 28796 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || |||||||| || || || ||||||||||||| ||||||||||| Sbjct 28797 TCCAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 28856 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| | |||||||| || ||||| ||| Sbjct 28857 TGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGTGTGATGGTC 28916 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 28917 TTGCCAGTCAGCGTCTTCACAAAAATCTGCATCTT 28951 >seq23339 Length=10106 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | ||||||||||| || ||||| || || | || || | ||||||| Sbjct 3409 AGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATCT 3350 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| | | || |||||||| |||| ||||| |||||| Sbjct 3349 TCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 3290 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 ||||||||| || || || || |||||||| Sbjct 3289 TGGATCTTTGCCTTGACATTCTCAATGGTGTC 3258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158066984101805