Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq72329 123 2e-23 seq4762 123 2e-23 >seq72329 Length=2074 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| || ||| Sbjct 881 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 940 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || || ||||| || || | |||||| ||||||||||| | ||| ||||| | Sbjct 941 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 1000 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || |||||||| || | |||||||| || || | ||||| Sbjct 1001 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCAT 1041 >seq4762 Length=89736 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| || ||| Sbjct 82756 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 82815 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || || ||||| || || | |||||| ||||||||||| | ||| ||||| | Sbjct 82816 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 82875 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || |||||||| || | |||||||| || || | ||||| Sbjct 82876 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCAT 82916 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| || ||| Sbjct 87089 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 87148 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || || ||||| || || | |||||| ||||||||||| | ||| ||||| | Sbjct 87149 ACACCCAGACCAATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 87208 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || |||||||| || | |||||||| || || | ||||| Sbjct 87209 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCAT 87249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || |||||||| || || ||||| || ||||||||||| || || | | ||| Sbjct 89028 AAGTGTCTCCACTGAAAGCCATACACTGGGCCCAGGTCTCCTTCCTCACGATCAGTAAAG 89087 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || | || |||| ||| || ||||| || || || |||||||| | || ||||| | Sbjct 89088 CCATTTTTATCCAGAAACTCCCTGGAGCCATTAGCATCCCAGATTCTCACGCCCTTTTGT 89147 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||||| ||||| || || Sbjct 89148 GACAGCTCTTTGGCATTTGTTGAACC 89173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405801559521502