Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9986 104 2e-17 >seq9986 Length=217236 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || || || || | ||| ||||| | |||||||| || Sbjct 86715 TCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 86656 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || |||| ||||| |||||||||||||| || ||||| || || |||||||| Sbjct 86655 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAACGCC 86596 Query 4692 AC 4693 || Sbjct 86595 AC 86594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || || || || |||| ||||| ||||||||||| || || ||||| || Sbjct 85097 GGATCTTTGATGTAGGTATCAATTAACAGGCTGTACATTTCAGAGTGAATGTTTTCCATT 85038 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||||||| || || || ||||| | |||||||| ||||| ||||| | | ||||| Sbjct 85037 GCAATCTGGAAACCATAGAAGCAACGGGCTTCTGTCACTTGGACTTCCTGAGTAAATC 84980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || || || || |||| ||||| ||||||||||| || || ||||| || Sbjct 85972 GGATCTTTGATGTAGGTATCAATTAACAGGCTGTACATTTCAGAGTGAATGTTTTCCATT 85913 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||||||| || || || ||||| | |||||||| ||||| ||||| | | ||||| Sbjct 85912 GCAATCTGGAAACCATAGAAGCAACGGGCTTCTGTCACTTGGACTTCCTGAGTAAATC 85855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426669362642981