Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq19305 111 2e-19 seq9986 84.2 3e-11 >seq19305 Length=42216 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| |||||||| ||||||||| ||| | || || || || ||||| | Sbjct 22453 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGAATGT 22512 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || || || ||||| ||||||| ||| || ||||| |||| ||||||| Sbjct 22513 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGATGGTCT 22572 Query 76969 TTTGAGGAATTTCCCA 76984 |||||| || ||||| Sbjct 22573 TTTGAGAGATCTCCCA 22588 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 |||| ||||| || |||||||| ||||| || || ||| ||||||| | ||| ||| Sbjct 25504 ACTCTCTTCATGAACAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 25563 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || ||||| ||||||||||| || || || || || | ||| ||| ||||||| || Sbjct 25564 TCCTCTTTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 25623 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | |||| |||| Sbjct 25624 TCCAGGTACATGGCAAAAGCTCCTGGTC 25651 >seq9986 Length=217236 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || || || ||||| || ||||| ||||| | || || Sbjct 86715 TCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 86656 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || || | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 86655 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAACGC 86597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694034419768480