Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq19305 105 1e-17 seq9986 102 1e-16 >seq19305 Length=42216 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||| | Sbjct 22453 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGAATGT 22512 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || || ||||| ||||||| ||| || ||||| |||| ||||||| Sbjct 22513 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGATGGTCT 22572 Query 75564 TTTGAGGAATTTCCCA 75579 |||||| || ||||| Sbjct 22573 TTTGAGAGATCTCCCA 22588 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 76604 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCA 76663 ||||| || |||||||| ||||| || || ||| ||||||| | ||| |||| || Sbjct 25510 TTCATGAACAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGTTCCTCT 25569 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 ||||| ||||||||||| || |||||||| || | ||| ||| ||||||| || || || Sbjct 25570 TTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGCTCCAGG 25629 Query 76724 TATATCGCCATAACACCCGGTC 76745 || || || | | | || |||| Sbjct 25630 TACATGGCAAAAGCTCCTGGTC 25651 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || ||||| | |||||| || |||||||||||||| || ||||| || || ||| Sbjct 26213 GTGCCGGCGTTAAAGAGTGTAGGGGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 26272 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 || ||||||||| ||||| | || ||| | ||| || || || || | || | ||||| Sbjct 26273 TAGGTTTCAATAGCTGCTGCAATGTCCTCCTTG-TGGATGCCCACGGACACTCTCATCAG 26331 Query 77113 CATATGCTGAGGTCGTTC 77130 ||| ||||| || || || Sbjct 26332 CATGTGCTGTGGGCGCTC 26349 >seq9986 Length=217236 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || || || ||||| |||||||| ||||| | ||| || Sbjct 86715 TCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 86656 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || |||| || ||||| ||||||||||| || ||||| || || || || || Sbjct 86655 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAACGCC 86596 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 86595 ACCACTCTCTCCCC 86582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712283339394240